RNA id: TU2160113


Basic Information

Item Value
RNA id TU2160113
length 311
lncRNA type intronic
GC content 0.43
exon number 2
gene id G1888257
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 61851379 ~ 61852170 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtccggaacctccaatgacGGGCCACtgaccggaacctccaacgacggtcaaCAGTCCGGAGCCTGTTTCTGTTTAttgtctgcacctgacaggactatTTCgtttttccctctttgttattttgtttgagtgttttgagTATTAAATGTATCATGAGCACTTACCACGCTCAgttttggtccactccttcatACGACGATCGTTACACCTGCTGTATGTGATGTCACAGGGATGTTTTAATATAGAATATTGACCTATTAGTTTTAGTCCTGCTGTGTGTGATGTCATGGGGATGTTTAATATAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160106 lncRNA upstream 16312 61834610 ~ 61835067 (+) True G1888251
TU2160093 lncRNA upstream 48479 61802002 ~ 61802900 (+) True G1888238
TU2160014 lncRNA upstream 177800 61672976 ~ 61673579 (+) True G1888170
TU2160004 lncRNA upstream 201893 61649054 ~ 61649486 (+) True G1888161
TU2159964 lncRNA upstream 260389 61589736 ~ 61590990 (+) True G1888129
TU2160124 lncRNA downstream 14004 61866174 ~ 61866540 (+) True G1888265
TU2160164 lncRNA downstream 80341 61932511 ~ 61932786 (+) True G1888302
TU2160172 lncRNA downstream 97038 61949208 ~ 61949464 (+) True G1888309
TU2160178 lncRNA downstream 103887 61956057 ~ 61956327 (+) True G1888315
TU2160179 lncRNA downstream 108531 61960701 ~ 61961013 (+) True G1888316
XM_036959920.1 mRNA upstream 35705 61743749 ~ 61815674 (+) True LOC118943839
XM_036959919.1 mRNA upstream 231182 61615982 ~ 61620197 (+) True LOC118943838
XR_005039280.1 mRNA upstream 237108 61606024 ~ 61614271 (+) True LOC110522442
XM_036960957.1 mRNA upstream 275705 61558011 ~ 61575674 (+) True LOC110532895
XR_005039279.1 mRNA upstream 296209 61541152 ~ 61555170 (+) False LOC118943929
XR_005039282.1 mRNA downstream 185485 62037655 ~ 62038684 (+) False LOC118943931
XR_005039283.1 mRNA downstream 185485 62037655 ~ 62038684 (+) False LOC118943931
XM_036960966.1 mRNA downstream 225843 62078013 ~ 62114232 (+) False LOC110531647
XM_036960976.1 mRNA downstream 225847 62078017 ~ 62103617 (+) False LOC110531647
XM_036960974.1 mRNA downstream 225847 62078017 ~ 62104743 (+) False LOC110531647
TU2159617 other upstream 573616 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 1680599 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 2063390 59783986 ~ 59787989 (+) True G1886561
TU2158069 other upstream 2065284 59763313 ~ 59786095 (+) False G1886560
TU2160160 other downstream 74576 61926746 ~ 61927857 (+) True G1888298
TU2160531 other downstream 712355 62564525 ~ 62565083 (+) True G1888544

Expression Profile