RNA id: TU2160164


Basic Information

Item Value
RNA id TU2160164
length 276
lncRNA type intronic
GC content 0.44
exon number 1
gene id G1888302
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 61932511 ~ 61932786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaaggagtgcactataaagggagaaggagtgcactataaagggagaaggagtgcactataaagggagaaggagtgcactataaagggtaaaggagtgcactataaagggtaaaggagtgcactataaagggagaaggagtgcactataaagggtaaaggagtgcactataaagggtaaaggagtgcactataaagggagaaggagtgcactataaagggaaaaggagtgcactataaagggagaaggagtgcactataaagggtaaaggagtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160124 lncRNA upstream 65971 61866174 ~ 61866540 (+) True G1888265
TU2160113 lncRNA upstream 80341 61851379 ~ 61852170 (+) True G1888257
TU2160106 lncRNA upstream 97444 61834610 ~ 61835067 (+) True G1888251
TU2160093 lncRNA upstream 129611 61802002 ~ 61802900 (+) True G1888238
TU2160014 lncRNA upstream 258932 61672976 ~ 61673579 (+) True G1888170
TU2160172 lncRNA downstream 16422 61949208 ~ 61949464 (+) True G1888309
TU2160178 lncRNA downstream 23271 61956057 ~ 61956327 (+) True G1888315
TU2160179 lncRNA downstream 27915 61960701 ~ 61961013 (+) True G1888316
TU2160180 lncRNA downstream 29601 61962387 ~ 61962698 (+) True G1888317
TU2160185 lncRNA downstream 42550 61975336 ~ 61975548 (+) True G1888322
XM_036959920.1 mRNA upstream 116837 61743749 ~ 61815674 (+) True LOC118943839
XM_036959919.1 mRNA upstream 312314 61615982 ~ 61620197 (+) True LOC118943838
XR_005039280.1 mRNA upstream 318240 61606024 ~ 61614271 (+) True LOC110522442
XM_036960957.1 mRNA upstream 356837 61558011 ~ 61575674 (+) True LOC110532895
XR_005039279.1 mRNA upstream 377341 61541152 ~ 61555170 (+) False LOC118943929
XR_005039282.1 mRNA downstream 104869 62037655 ~ 62038684 (+) False LOC118943931
XR_005039283.1 mRNA downstream 104869 62037655 ~ 62038684 (+) False LOC118943931
XM_036960966.1 mRNA downstream 145227 62078013 ~ 62114232 (+) False LOC110531647
XM_036960976.1 mRNA downstream 145231 62078017 ~ 62103617 (+) False LOC110531647
XM_036960974.1 mRNA downstream 145231 62078017 ~ 62104743 (+) False LOC110531647
TU2160160 other upstream 4654 61926746 ~ 61927857 (+) True G1888298
TU2159617 other upstream 654748 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 1761731 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 2144522 59783986 ~ 59787989 (+) True G1886561
TU2158069 other upstream 2146416 59763313 ~ 59786095 (+) False G1886560
TU2160531 other downstream 631739 62564525 ~ 62565083 (+) True G1888544

Expression Profile