RNA id: TU2160179


Basic Information

Item Value
RNA id TU2160179
length 313
lncRNA type intronic
GC content 0.45
exon number 1
gene id G1888316
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 61960701 ~ 61961013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctattccctacatagtgcactacttttgaccagagtccagcTTAAATGAAGTAACACAGAACACGTTTAGGGTTACAGCATTAGCAGTAgtttgcatccaaaatggcatcctattccctacatagtgcactacccaatgggccctggtcgaaagtgGTGCActttacagggaatagggtgcagtttgGGATATACACAAAGACACTTCTGCTACCGCTATATCCCTAAACATGTCCTGGGTCAATTCATTTACACCTGCTAATCAAATAATGACAAGCTAACCAGAGAGAAAGACACCAGCGCAGAGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160178 lncRNA upstream 4374 61956057 ~ 61956327 (+) True G1888315
TU2160172 lncRNA upstream 11237 61949208 ~ 61949464 (+) True G1888309
TU2160164 lncRNA upstream 27915 61932511 ~ 61932786 (+) True G1888302
TU2160124 lncRNA upstream 94161 61866174 ~ 61866540 (+) True G1888265
TU2160113 lncRNA upstream 108531 61851379 ~ 61852170 (+) True G1888257
TU2160180 lncRNA downstream 1374 61962387 ~ 61962698 (+) True G1888317
TU2160185 lncRNA downstream 14323 61975336 ~ 61975548 (+) True G1888322
TU2160206 lncRNA downstream 47856 62008869 ~ 62010790 (+) True G1888335
TU2160207 lncRNA downstream 50091 62011104 ~ 62012392 (+) True G1888336
TU2160221 lncRNA downstream 52947 62013960 ~ 62014508 (+) True G1888347
XM_036959920.1 mRNA upstream 145027 61743749 ~ 61815674 (+) True LOC118943839
XM_036959919.1 mRNA upstream 340504 61615982 ~ 61620197 (+) True LOC118943838
XR_005039280.1 mRNA upstream 346430 61606024 ~ 61614271 (+) True LOC110522442
XM_036960957.1 mRNA upstream 385027 61558011 ~ 61575674 (+) True LOC110532895
XR_005039279.1 mRNA upstream 405531 61541152 ~ 61555170 (+) False LOC118943929
XR_005039282.1 mRNA downstream 76642 62037655 ~ 62038684 (+) False LOC118943931
XR_005039283.1 mRNA downstream 76642 62037655 ~ 62038684 (+) False LOC118943931
XM_036960966.1 mRNA downstream 117000 62078013 ~ 62114232 (+) False LOC110531647
XM_036960976.1 mRNA downstream 117004 62078017 ~ 62103617 (+) False LOC110531647
XM_036960974.1 mRNA downstream 117004 62078017 ~ 62104743 (+) False LOC110531647
TU2160160 other upstream 32844 61926746 ~ 61927857 (+) True G1888298
TU2159617 other upstream 682938 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 1789921 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 2172712 59783986 ~ 59787989 (+) True G1886561
TU2158067 other upstream 2174606 59774662 ~ 59786095 (+) True G1886560
TU2160531 other downstream 603512 62564525 ~ 62565083 (+) True G1888544

Expression Profile