RNA id: TU2160220


Basic Information

Item Value
RNA id TU2160220
length 431
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G1888346
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62015599 ~ 62016029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgggtttgattcccgggaccacccacaTATAATATGTATGCAGCAGGACTGTTAGTCTCTTTGGAataaagcatctgctaaatggcatatagtattatattatacagtgccttcagaacatATTCACACCAcctgactttttcaaaatgttgtgttacatggtgggattaaaatggattgaatgtcattttttgtcaacgatctacacaaaacacTCTGTAATGTCATAGTGGAAGAACAAttaacatttattaaaaatgtatAACACACCCCACTAATATTcagtttttctgggtaagtctctaaaagaTTTGCACACCCGGagtgtacaatatttgcacattattctttagcttttcaagctgatttaagtcaaaactgtaactagaccaCTATATCTCTATCTGTTTTATATCTCTCTGTTCTATATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160221 lncRNA upstream 1091 62013960 ~ 62014508 (+) True G1888347
TU2160207 lncRNA upstream 3207 62011104 ~ 62012392 (+) True G1888336
TU2160206 lncRNA upstream 4809 62008869 ~ 62010790 (+) True G1888335
TU2160185 lncRNA upstream 40051 61975336 ~ 61975548 (+) True G1888322
TU2160180 lncRNA upstream 52901 61962387 ~ 61962698 (+) True G1888317
TU2160228 lncRNA downstream 286 62016315 ~ 62016516 (+) True G1888354
TU2160224 lncRNA downstream 7166 62023195 ~ 62025102 (+) True G1888350
TU2160238 lncRNA downstream 19973 62036002 ~ 62038690 (+) False LOC118943931
TU2160237 lncRNA downstream 21173 62037202 ~ 62038690 (+) False LOC118943931
TU2160244 lncRNA downstream 21173 62037202 ~ 62038690 (+) True LOC118943931
XM_036960954.1 mRNA upstream 24943 61823465 ~ 61990656 (+) True LOC110516873
XM_036959920.1 mRNA upstream 199925 61743749 ~ 61815674 (+) True LOC118943839
XM_036959919.1 mRNA upstream 395402 61615982 ~ 61620197 (+) True LOC118943838
XR_005039280.1 mRNA upstream 401328 61606024 ~ 61614271 (+) True LOC110522442
XM_036960957.1 mRNA upstream 439925 61558011 ~ 61575674 (+) True LOC110532895
XR_005039282.1 mRNA downstream 21626 62037655 ~ 62038684 (+) False LOC118943931
XR_005039283.1 mRNA downstream 21626 62037655 ~ 62038684 (+) False LOC118943931
XM_036960966.1 mRNA downstream 61984 62078013 ~ 62114232 (+) False LOC110531647
XM_036960976.1 mRNA downstream 61988 62078017 ~ 62103617 (+) False LOC110531647
XM_036960974.1 mRNA downstream 61988 62078017 ~ 62104743 (+) False LOC110531647
TU2160160 other upstream 87742 61926746 ~ 61927857 (+) True G1888298
TU2159617 other upstream 737836 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 1844819 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 2227610 59783986 ~ 59787989 (+) True G1886561
TU2158067 other upstream 2229504 59774662 ~ 59786095 (+) True G1886560
TU2160531 other downstream 548496 62564525 ~ 62565083 (+) True G1888544

Expression Profile