RNA id: TU2160248


Basic Information

Item Value
RNA id TU2160248
length 4684
lncRNA type intronic
GC content 0.39
exon number 1
gene id G1888363
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62048487 ~ 62053170 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAACTCTCCATGAATGACATGTACTTTATGCAGTACTGTTTGGTGATGGTGGGTCTGAATGGGGGTGTGAATCATGCCTATGGGGCCACTGGTAATGTGCACGCTGTTGGGATGGAGCCTACAGAGCCTAACCTTTTAACTTTTTTACACAttctgttgttttacagcctggattaaattgagatgttatgtcactggcctacacacaatacaatacccAAATTCATTCAAATGAAAAGCTGTAATGTTGTGAGTCAATAAGTTTTCTATCCTTTTGTTATgggaagcctaaataaattcaggggtaaaaatgtgcttaacaagtcagataatggatcaacaacattgtagttactccacaatagtaacctaaatgacagagtgaaaacaaggacgcctgtacagaataaaaatattccaaaacatgcatcctgtttgcaacaaggcactaaagtaaaactgcagcaaaatgtggcaaagaaatgaactttcatgtcctgaatacaaagcgttatgtttggggcaaatccaacaacacatcactgagtaccactcttcatattttcaagcatggtggtggctgcatcatgttatgagtatgcttgtcattggcaaggactagggagtttttttttataaaaaaaatggaatagagctaagcacaggcaaaatcctagaggaaaacctggttcagtctgctttctaacagacactgggagacaaatgcacctttcagctggacaataacctaaaacacagggCCAAATCTAcagtggagttgcttaccaaggtgacatttaatgttcctgagtggcctcgttacagttttgatttaaatgggcttgaaaatctatggcaagacttgagaatgtctgtctagcaatgatcaacaaccaaacgTGACAGAGCTAGAagaaaagaataatgtgcaagtattgtacaatccaggtgtgcaaagctcttagagacttacccagaaagactcacagctgtaatcactgccacacataattctaacatgtattgactcagcggTGTCAATACTTATGTACAATGAAATGTTTCTGTATTTCAGTtccaatacatttacaaaaatgtctaaaaacatgtttcccatttgttattatggggtagtgtgtgtagatgggtgagaaaataaatacattataatccatgttgaattcaggctataacacaacatgtggaataaatcaagtggattgaatactttccgaaggcactgtatatgctagGAGCTAGTCCTATTGGCTATAGGCTAGGCTACAGTTATTAATCATATAGCCTATCTTGGATACAATTAGGTGCTCTTAAAATCCGTGCATCGATGCGTACTGTCAGACCATTCTCTCATAACTCCTATGTGCTTCATGTTGTCATTGAGACCGAAATACTTTGTTCCCGATCCCAAAATAACACATGCAGTTGCCAAAGAAGACGAGGGGCGGGTTTACCGCCCGGCCCTGCTAATAATCCATTCAACATTGTACGCGAGCGGACAGGCCTTTTAGGGGTCTGCGTAGATCTCAGTCGTCCTACATCTTCAGATATTATGTAATGTCAGTTATCCTATAAGATTGAAAATTGCAGCAATGTTATTTTGTAGGCTGTACATGAATAAAGTTTAGGCTACAAATCAATCTCTGGTGATCTTGTGTTGTGTCATGGTGTAGCTTATAGGCTCTCAACATcattataatatatattattttttaactaggtaagtcagttaagaacaaattcttattttcaatgacagtctaggaacagtgtgttaactgcctgttcaggggcagaacgacagaacggCTCGGGGgctttgaactcacaaccttccggttactagtccaacgctctaaccactaggctaccctgccgcccctatgtGAATATGGCACACAGTGCAATGATAGGCCTAATGCATGATAACAGAAATAGGTTAGGCCAAATAGCCTGCAGTAACTTAATTTCCTATAGGCTTTGTGTGAATGATTGATTATTCAGAGGTTTTTTTATCTGGACTTCTGCCTACTTTGAGTGACACGGAGGCAGACTGTCATCACTCCTAGAATCCAACTAGATGACACCATAATAAAGGTTATCTCCCACTCAGAGATTCCTGTCCTCCTCCCAATAGGCCTACTGACAGTTTGAACATATCTAAAACATGCTGCAGCTTTCTAATAAGAAGGCCTAATTTACTGTCACTTATAAAAGAAAAAGTCATTTTGTTACCAAATCTGTCAGTTAGCTAAATGGCTAGGGTGGTAGGCCTAAGTTACTTACATTAATGAACAAACTTAATAGGTCATTTTGATAAGTATATGCTATATATTTCATATGAGACGGCCATGTTGTCTGTTAATCAGGTTCCAGATTTATATGTAGATGATCTTGATCAGCTGATCAGCTGTCCCTGTCTGATGTTGATTTTTGATGTAACAGTGATTTTGTTATTTCCATATACACTTTAGATTGAATATTCATAAAACTGTACATGGTTTATATTCCATTGTGAAATCTCTGCCCACATCTAGGCCACCGGCGAGCTAAAACTAAATCACCCTTGTAGACTAGTAGGGATGGATGTTGGAATCTACAGTTTGAACTTGTGCACTAAACTAAATCTACAGGCTACCATACTGTACAGTCTTTGAGACTACATTACATCTAGGCCTTGGTCATGACTGTCAGTTCCATTAAATTACACACAAGAGTCATAAGAGTCTCAGGTCCATTAcgttacacataagagtcattggaAGAAGGCCTCTTCTGTAGGTGGGAGTACTACAGCTTCTTCAGGATCAGTGTCCTGTCCTCGGGATGGTTgtgctaacgtaggctaatgtgattagcatgaggttgtaagaaacaaaaaataaatccagtacatagacatatctgatatgggcagaaagcttcaatttacagtagccattacaTGGTAttataataccatgctattgtttgaggagtgtGCACAAATGTatgaataaaccaattaggcacatttgggcagtcttgatacaacatttttaatAGATATGCCATAGTTCATTACTTCactctaaaactttgcacatacagtgctgccatctagtggcaaaattctaaattgcgcctgggctaggaacgtttttttttctttgtattatcttttatcagatctaatgtgttatattctcctacatttgtttcacatttccacaaacttcaaagtgtttcctttcaaatggtatcaagaaaatgcatatccttgcttcaggtcctgagctacaggcagttagatttggttatgtcattttaggcgaaaattgaaaaaaaggggcggatccttaagacgTTCCATGATGCTCTGTTTAACATGCATCACTTGGGTTACGGTTTTAAAAGCATAAGGattatctttcatatcagtgaGAAAAAATTGTCAAAAAACAAAGGGTTAAATTGGTACACACCTTGATAGGATGAGGGTTAGTGTTCCCACTgggccatatctccatgttacagcaCATGTTTATGGATTACAGATGGAAGACAGAGGttccacctgtgctaattagctgtCTATCATGCTTcaaacacctgtgtgtaatggAAGAAGGCTGCCAGAAAcatgttgtcactgaaaaatactgtccaCAGCAACTGTGATAAAGCCAGTTAAAACCTTGTACAGTAAGGgtatattttgcatttgtgaaattattttaatGTGACATGAAAGTCAAGGGCTTTATTATTCTAGAGCCATATTGCAATTAAGAATCGATTCACTTTTAGAcggagtatttggctgttttggctgccACAGTCAGTATACCGCTGAAAATAacatttactgaacaaaaatatgaatacaaaatgtaatgtgttggtcccatgtttcatgagctgaaattaaagatccctgaaatgttccataatgcacaaaacatgtacagtatttctctcaaatttagtGCACAatttttgtttacatccctgttagtgagcatttctcctttgctaaaataatccatccacctgaaaggtgtgacacatcaagaagctgatgaaacagcatgatcataacacagatgcaccttgtgctggggacaataaaacagcactcttaaatgtgcagttttgtcacacaacacaatgttacAGATGtctcaggaatgtccaccagagctgttgccagataattgaatgttaatatcTCTACCATGGGCCGCCTCCCACATCGTTTTAGACAATTTGGCAGTactccaaccgacctcacaaccgtagaccatgtgtaactatgccagtccaggacctccatatccggcttcttcacctgcgggatcgtctgagaccagccacccggacagctgatgaagctaaggagtatttctgtctctaataaagcccctttgtgtGGGAaatctcattctgattggctgggcctggctccccagtcattgggcctggctcccaagtgggtgggcctatgccctcccaggcccacccatggttatgcccctgcccagttatgtgaaatccataaattagggtcaaattgatttattttaattgactgattaccttacatgaactgtaactcagtaaaacctttgaaattgttgcatattgcgtttatatttttcttcagtatataAAGATCATTGGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160238 lncRNA upstream 9797 62036002 ~ 62038690 (+) False LOC118943931
TU2160237 lncRNA upstream 9797 62037202 ~ 62038690 (+) False LOC118943931
TU2160244 lncRNA upstream 9797 62037202 ~ 62038690 (+) True LOC118943931
TU2160224 lncRNA upstream 23385 62023195 ~ 62025102 (+) True G1888350
TU2160228 lncRNA upstream 31971 62016315 ~ 62016516 (+) True G1888354
TU2160249 lncRNA downstream 188 62053358 ~ 62054049 (+) True G1888364
TU2160251 lncRNA downstream 4237 62057407 ~ 62057756 (+) True G1888366
TU2160227 lncRNA downstream 24843 62078013 ~ 62080375 (+) False LOC110531647
TU2160210 lncRNA downstream 59332 62112502 ~ 62113417 (+) True LOC110531647
TU2160258 lncRNA downstream 69587 62122757 ~ 62178580 (+) True G1888373
XR_005039282.1 mRNA upstream 9803 62037655 ~ 62038684 (+) False LOC118943931
XR_005039283.1 mRNA upstream 9803 62037655 ~ 62038684 (+) False LOC118943931
XM_036960954.1 mRNA upstream 57831 61823465 ~ 61990656 (+) True LOC110516873
XM_036959920.1 mRNA upstream 232813 61743749 ~ 61815674 (+) True LOC118943839
XM_036959919.1 mRNA upstream 428290 61615982 ~ 61620197 (+) True LOC118943838
XM_036960966.1 mRNA downstream 24843 62078013 ~ 62114232 (+) False LOC110531647
XM_036960976.1 mRNA downstream 24847 62078017 ~ 62103617 (+) False LOC110531647
XM_036960974.1 mRNA downstream 24847 62078017 ~ 62104743 (+) False LOC110531647
XR_005039286.1 mRNA downstream 24847 62078017 ~ 62108596 (+) False LOC110531647
XM_036960969.1 mRNA downstream 24847 62078017 ~ 62111469 (+) False LOC110531647
TU2160160 other upstream 120630 61926746 ~ 61927857 (+) True G1888298
TU2159617 other upstream 770724 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 1877707 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 2260498 59783986 ~ 59787989 (+) True G1886561
TU2158067 other upstream 2262392 59774662 ~ 59786095 (+) True G1886560
TU2160531 other downstream 511355 62564525 ~ 62565083 (+) True G1888544

Expression Profile