RNA id: TCONS_00057519


Basic Information

Item Value
RNA id TCONS_00057519
length 1263
lncRNA type inter_gene
GC content 0.47
exon number 5
gene id XLOC_026987
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1950010 ~ 1974894 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCAGTATCAGTCTGCCGTACAGAGTAGAAGCTCTAGAAGGATCCTGTGTTTTTATACCCTGCATATTCCAGATTGATGAAGATTATAAAGATGACCTCACTGATGCTGCAAAGGGATTATGGTATAAAGAAATATACCCTTCTGGTTTGGTGTTTAACTCCAGCAGCCCTGACAGTGGACAGTTAAAAGGAGAAATGTTTGACAAAGCTACAGAGAAAAACTGCAGCACTCGCTTCGATAATCTCAAACTCACAGACAGTGGCTCATATTACTTCAGACTTGAAAGCAACGGTGGACTAAAATGGAGCTACATAGAAGCGTCTCCACCCAATCCCACAGTGCTTCTGTTTCAGGATCAGCAGGAGGTGATGGAGGTGACGGAGGGAAAATCAGTGACTCTGAGCTGCTTTAAGATCTTCTGTCCGTCTCTTCCATCATCTCTCACATGGAGCTTCAGTCCTGAACACCTCATCAATGCAAACATCACAGAACAGCAGCATCAAAACCAAACACATTACTACTCTGATCTGATGTTCACTGTAACTCAGCATCATCACAGAGCTGAATTCACCTGCACTGCAACACAGCAGCAGATCACAACACACAGCACCCGACAGCTACATGTTCAGTGTAAGACAGGAATTACTTCAGTCACAGATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACAATGAAGGAGACCTGGAACCAGTGCAGACCGGACCAAACCTGACCATCAGCAACACAAACCTGACTGAGACAAACCTGACCTTGAGCTACTCCAACCTGACCATCAACGACATCAACCCATCACACAGTGGACGATACTACTGCAGAGCTAAAAACCAACATGGGACTCAGAACACATCAGTGCTGCTGGACGTCCACTTTCCCCCTCAAACCCCTTTTTGTCTTGGAAATGCTCCTAAAAGTGTCTCTGCTCATGTGAATGGTGCAGCAGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACACTGAAGGAGACCTGAAACCAGTGCAGACCGGACCAAACCTGACCATCATCAACATCAACCGCACACACAGTAAACGATACTACTGTAGAGCTGAAAACCAACAAGGGACTCAGAACACATCAGTGCTGCTGGACGTC

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0140096 catalytic activity, acting on a protein molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057517 lncRNA upstream 8830 1936477 ~ 1941248 (+) False XLOC_026986
TCONS_00057516 lncRNA upstream 83628 1865560 ~ 1866450 (+) True XLOC_026985
TCONS_00057515 lncRNA upstream 87566 1857483 ~ 1862512 (+) True XLOC_026984
TCONS_00057514 lncRNA upstream 97424 1845630 ~ 1852654 (+) True XLOC_026983
TCONS_00057513 lncRNA upstream 104922 1844405 ~ 1845156 (+) True XLOC_026982
TCONS_00057522 lncRNA downstream 6619 1965439 ~ 1972711 (+) False XLOC_026987
TCONS_00057111 lncRNA downstream 7589 1966409 ~ 1967986 (+) False XLOC_026987
TCONS_00057523 lncRNA downstream 24843 1983663 ~ 1986858 (+) True XLOC_026988
TCONS_00057524 lncRNA downstream 386828 2345648 ~ 2349381 (+) True XLOC_026994
TCONS_00057526 lncRNA downstream 393952 2352772 ~ 2355189 (+) False XLOC_026995
TCONS_00053249 mRNA upstream 178770 1761029 ~ 1771308 (+) False XLOC_026980
TCONS_00053248 mRNA upstream 190523 1757462 ~ 1759555 (+) True XLOC_026979
TCONS_00053246 mRNA upstream 219158 1722899 ~ 1730920 (+) False XLOC_026977
TCONS_00053244 mRNA upstream 306977 1620102 ~ 1643101 (+) True XLOC_026974
TCONS_00053243 mRNA upstream 309722 1619584 ~ 1640356 (+) False XLOC_026974
TCONS_00053258 mRNA downstream 100872 2059692 ~ 2062435 (+) True XLOC_026989
TCONS_00053259 mRNA downstream 133863 2092683 ~ 2099581 (+) True XLOC_026990
TCONS_00053260 mRNA downstream 269934 2228754 ~ 2250264 (+) False XLOC_026991
TCONS_00053261 mRNA downstream 271881 2230701 ~ 2250254 (+) True XLOC_026991
TCONS_00053262 mRNA downstream 293303 2252123 ~ 2258796 (+) False XLOC_026992
TCONS_00053253 other upstream 6492 1937522 ~ 1943586 (+) False XLOC_026986
TCONS_00053254 other upstream 7923 1937920 ~ 1942155 (+) False XLOC_026986
TCONS_00053247 other upstream 224284 1722903 ~ 1725794 (+) True XLOC_026977
TCONS_00053233 other upstream 758434 1191527 ~ 1191644 (+) True XLOC_026966
TCONS_00053221 other upstream 1395694 554267 ~ 554384 (+) True XLOC_026949
TCONS_00053257 other downstream 8936 1967756 ~ 1974208 (+) True XLOC_026987
TCONS_00053267 other downstream 623096 2581916 ~ 2582031 (+) True XLOC_026997
TCONS_00053290 other downstream 2417678 4376498 ~ 4387008 (+) True XLOC_027026
TCONS_00053293 other downstream 2731906 4690726 ~ 4690841 (+) True XLOC_027031
TCONS_00053296 other downstream 2875265 4834085 ~ 4888504 (+) False XLOC_027034