RNA id: TU2160788


Basic Information

Item Value
RNA id TU2160788
length 2279
lncRNA type read_through
GC content 0.40
exon number 3
gene id G1888769
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62118484 ~ 62219550 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcatagtcgagcatcttttcgtgacaaaatatcgcgcttaaaacgggaacgttttttatccaaaaatgaaatagcgcccctagagctctaacaggttaaaacaAACAAGGCAGATACAGTATAAACAGCAGTAACTCCTATTGAGAGACTTAATGTACATGAGATCTTAGTTATAGATTTCCTGTCAATCTTTGTTGTTGTGGTAGAGTGGACCAGTTGATTGTTTATTGGATAAGACAGAGAGGTAAAGGTAGGAATGTTGAAAGAGCAATGGGTTGGATCTGAACCCATTCTGGTACTGGACCATCCCAGACCACTGATTTCTTGTTAATGTTTGACTAATCTTTGACGTTTCTTTCACCAATCCCTTGGACTGTTCTGTCTTCATGAgagtgtgttatatatatatatttttattctctGTGTTTTCTAAAAGTatagtgctttctgtggtggtggggcaagagGGCAAAAAATATGGAGcgttgtgccgtgattggctcagtgttctgtctctcatggggacactacgtcacctcGAAGTCGATGGGTAGACTTCCAAAATTCTAGCCCTTTGGGTGCTGCcgtagagttacattagaagtgcccatccaagaaggctcaaggtcattgataaaatgacatcaaatcatgtTACATGTACAGCAGCTTTGATTGGACAGATCATGTTAACATCAttctttcaaaatcttagctggcAGTCAatatcatgaatcaagtcgacaatctactggcaaatcctttttaatccttgtcatatgaagataaataataaaGTGAAATTATAGATAAACCGTATCGATGCTTATcgaccattggacataaacattacacaacaagttagaaatcgcaaattcaacaataagtggtttggaaggaagtgctcacagcacaacaaggtgagtccaaaaatgtcttgtatgctgctgcataaatgatgtaatatgtaaGAAAGTAATAAGTAATAAggtaagaaagtaatactaagtgtatgttgtgtagtaagctgttagtagcccatgtgcctcacgctaatcatttggtcccttttcccttttttgtaaatttcaaaagtgctgaacaagtaGTTATATTGACAacatccgtcctagctcgctcattaatgtcttaatctaaattacagaTTGTCTCTTATCCGCTCctccatagtttgtacatctcaattgtcagtagaaaccacatttgtttaaacaagtcagccatatcagctatgttttttttttttttatcagtaaatgaggctgaatgaaccgtttcgctgccagacatggctccgctgatagccaggtgtagcagtggtaaggtgttgggactctgctgttgggactctgctgttgggactctgatGTTGGGCCCTAACAGTTTATGGGCACTGTTTGTAACCGTTACcttgcaattaatgtattgtttagtgttgtgttgtattgtggctttgctggaatacacaagatttacatgctaaaattgcaaCTGGTTGTGTAACCTTTCTGCTGTGTGCTCCTACATTTAGGTAACAATATAGCAGCAGCACAaaatacatgtgttttatatattgATCATTTGATAATTAAATGTTCTGAAAGAGGGTTTAAAAATAGTTTCATCTCCATCATTGTCATCAGACAGACTACAGTTTCATACAGACTACTATATCAGACAGACTACTGTTGTAGACAGACTACCCCATCAGACTACTGTATCAGAAAGACTAATGTGTCAGACAGAGTAGTCTGATAGAGTAGTCTATGAGTCAGACTACTGTATACGACAGACTAACCATCAGACTACTGTATCAGACATACTATTATATCAGACAgaccactgtgcttctacatctgcattgcttgctgtttggggttttaggctgggtttctgtatagcactttgtgacaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaagaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggagattataacagaacatggccaagatgttcaaatgttcataaattaccagtattggtcaaataataataatcacaggcagaacagttgaaactggagcagcagcacagccaggtggactgggtacagcaaggagtcatcatgtcaggtagtcctgaggcatggtcctagggctcaggtcctcagtgagagagagagaaagagagaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160830 lncRNA downstream 4263 62110846 ~ 62114221 (-) True G1888806
TU2160836 lncRNA downstream 35104 62080685 ~ 62083380 (-) True G1888812
TU2160785 lncRNA downstream 48973 62060287 ~ 62069511 (-) True G1888766
TU2160782 lncRNA downstream 59334 62057396 ~ 62059150 (-) True G1888763
TU2160784 lncRNA downstream 61755 62056334 ~ 62056729 (-) True G1888765
TU2160867 lncRNA upstream 1987 62221537 ~ 62222170 (-) True G1888832
TU2160894 lncRNA upstream 48035 62267585 ~ 62268415 (-) False LOC110532867
TU2160872 lncRNA upstream 56889 62276439 ~ 62280979 (-) False LOC118943938
TU2160875 lncRNA upstream 56889 62276439 ~ 62280979 (-) False LOC118943938
TU2160880 lncRNA upstream 56889 62276439 ~ 62280979 (-) False LOC118943938
XM_036960963.1 mRNA downstream 56201 62019428 ~ 62062283 (-) True slc1a4
XM_036960964.1 mRNA downstream 56259 62019428 ~ 62062225 (-) False slc1a4
XM_036960962.1 mRNA downstream 70883 62019428 ~ 62047601 (-) False slc1a4
XR_005039284.1 mRNA downstream 82007 62034977 ~ 62036477 (-) False LOC118943932
XM_036960960.1 mRNA downstream 107832 61991088 ~ 62010652 (-) False LOC118943930
XM_036960977.1 mRNA upstream 1351 62220901 ~ 62242704 (-) False LOC118943933
XM_036960978.1 mRNA upstream 1351 62220901 ~ 62242704 (-) True LOC118943933
XM_036960997.1 mRNA upstream 38568 62258118 ~ 62273941 (-) False LOC110532867
XM_036960998.1 mRNA upstream 38568 62258118 ~ 62273941 (-) False LOC110532867
XM_036960999.1 mRNA upstream 38568 62258118 ~ 62273944 (-) False LOC110532867
TU2159535 other downstream 967314 61150056 ~ 61151170 (-) False G1887761
TU2159536 other downstream 967314 61150056 ~ 61151170 (-) False G1887761
TU2159537 other downstream 967314 61150056 ~ 61151170 (-) False G1887761
TU2159538 other downstream 967314 61150526 ~ 61151170 (-) True G1887761
TU2159143 other downstream 1292694 60774110 ~ 60825790 (-) True G1887449
TU2160887 other upstream 41287 62260837 ~ 62267505 (-) True G1888836
TU2160891 other upstream 50072 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other upstream 50191 62269741 ~ 62273827 (-) True LOC110532867

Expression Profile