RNA id: TU2160258


Basic Information

Item Value
RNA id TU2160258
length 1984
lncRNA type read_through
GC content 0.47
exon number 3
gene id G1888373
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62122757 ~ 62178580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGAACTCTGCCATCAGGTCGTATTTAATTTTgtgtattttacccctttttctccccagttgATAGTTACAGTCtagtctcatcgctgcaactcccgtacggactcgggagaggcaaaggtcattTTTTCAATTTCTTCCGAACCACAACCCAACCAAatcacactgcttcttgacacaatgcccacttaacccggaagccagccgaaccaatgtgtcggaggaaccACCGTACAGCTAGCGAcggtgtcagcgtgcactgcgcccgtctcgccacaggagtcgctggtatgcgatgggacaaggacatccctgccggccaaaccctcccctacccggacgatgctgggccccattggtctcccggtcgcggccagctgcgacagtgcctggactcaaacccataATCTCTAGCGGCACAGCTAGcctgatgcagtgccttagatcactgcgGCACTTGGGAGGCCCGTCAGTTCATTTTGAACCTTTGTAGACTTAAGGGGTGCTTTGAAGAACCTTTTCAAAAGAGGGGTTTCGTTTTGGAACCAGTAAGTGAGTAAAGGGCACTCGTGTGTATAATTAAAATTGAGAACATTGGCATTATGTGTCAGCTAGGACTCAGGTAAGGCGTTACAATACAGTTTTTTAATCACTATTACATGAACTAAGAAACCTTCTACTATATACTCTTTTGTTTTCTAGCCTATGAAATTACCTGTGGGGCCTTTGTCTGGCAAATACATTTCTGTTGTTACACTATAGAAGTGTTGGATTCCCTGTTTTGTAGTTACTTTGGAAGCGCGTCTGATGGCGACATCACATGACTGGATTACGAATTGCCGTTATATTTGACAAAAAACGTTGCTGAATGGAACGCTGACGAAAGGTTTATGAACGTCATCCCTCATCAGACCGGAGGTAAAGAGGCGAACATTTCATCGGACCGGAGGTAGAACTAGTGGCGCTCCTCAACTGTAAATGAATGTTCCCTGTGACAGTGTTAGAAGTGACTAAGATGAATGTATTCCATGAGTAGGAAGCCACTCAAGGAATGGGGAAACATATCAGATGATTTAATGAACGATACCTGAATGCAATGGGAAGGCCTGAAGATACCATGGGGAAGGTTACTCAAAGTAAAATGGTGACCACCACCACTCAGGTTGTCACAGGTCTCCATATCACACAGTCACGCATCTTGGCTGACCTGGGATCCCCATTGTTCACCACGTCTGTTCATACTGCACAGGGCCAGGGTCCAAGTACTATGTTATAACTACCACCACATACAGCTCTGTTTATACTGCACAGGGCCAGGGTCCAAGTACTATGTTATAACTACCACCACATACAGCTCTGTTCATACTGCACAGGGCCAGGGTCAATATACTATGTTATAACTACCACCACATACAGCTCTGTTTATACTGCACAGGGCCAGGGTCCAAGTACTATGTTGTAAATAAGTACTATCACCATATACAACTGTTCATCATAGGTCAACTAACACACTGTTGTAAGACCAAAAGGTAGGCAGCTGTAACTTCCAACTAGGGGAGGAAGGCCTTTCAACCCAGATCAGGGTGGAGCTGACAACACGGACAGTATTGTCAACATTCTGCTACACCAAAATGCTATCACTGAAAGGCTGGTAAGGCAGCAAAGGTTGTCTTCATTACCACCTCTTAGTGTACGACTGGGTGACCCACTACACTACAGGTTATTTGTACCAGTGTTTAAGGGTGACCCACTAGACGACAGGTTCTTTGTACATGGCTTTGAACATGCTATCGAAGACCGGACCGAGAACAGCAAAGATAGgttgtaccttttggagaaattcACCATGGGGCAACTCAAATTTGAGCTCAACTCATTTGTCTTACTGAAGTcgaggtagaggttgttgtcctgtcaccacactgccgggtctctgacctcctccccaaggctgtctcattgtctttggtgatcaggcctacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160210 lncRNA upstream 9340 62112502 ~ 62113417 (+) True LOC110531647
TU2160227 lncRNA upstream 42382 62078013 ~ 62080375 (+) False LOC110531647
TU2160251 lncRNA upstream 65001 62057407 ~ 62057756 (+) True G1888366
TU2160249 lncRNA upstream 68708 62053358 ~ 62054049 (+) True G1888364
TU2160248 lncRNA upstream 69587 62048487 ~ 62053170 (+) True G1888363
TU2160318 lncRNA downstream 14668 62193248 ~ 62194292 (+) True G1888403
TU2160325 lncRNA downstream 80946 62259526 ~ 62262559 (+) True G1888408
TU2160342 lncRNA downstream 92015 62270595 ~ 62271591 (+) True G1888425
TU2160344 lncRNA downstream 96462 62275042 ~ 62275258 (+) True G1888427
TU2160363 lncRNA downstream 97879 62276459 ~ 62285346 (+) True G1888429
XM_036960966.1 mRNA upstream 8525 62078013 ~ 62114232 (+) False LOC110531647
XM_036960965.1 mRNA upstream 8525 62078017 ~ 62114232 (+) False LOC110531647
XM_036960967.1 mRNA upstream 8525 62078017 ~ 62114232 (+) False LOC110531647
XM_036960968.1 mRNA upstream 8525 62078017 ~ 62114232 (+) False LOC110531647
XM_036960972.1 mRNA upstream 8525 62078017 ~ 62114232 (+) False LOC110531647
XM_036961008.1 mRNA downstream 113159 62291739 ~ 62339471 (+) True LOC110516194
XM_036961003.1 mRNA downstream 164821 62343401 ~ 62414422 (+) False LOC118936589
XM_036961007.1 mRNA downstream 165334 62343914 ~ 62414422 (+) False LOC118936589
XM_036961006.1 mRNA downstream 165337 62343917 ~ 62414422 (+) False LOC118936589
XM_036961004.1 mRNA downstream 165474 62344054 ~ 62414422 (+) False LOC118936589
TU2160160 other upstream 194900 61926746 ~ 61927857 (+) True G1888298
TU2159617 other upstream 844994 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 1951977 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 2334768 59783986 ~ 59787989 (+) True G1886561
TU2158067 other upstream 2336662 59774662 ~ 59786095 (+) True G1886560
TU2160531 other downstream 385945 62564525 ~ 62565083 (+) True G1888544

Expression Profile