RNA id: TU2160273


Basic Information

Item Value
RNA id TU2160273
length 1407
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G1888377
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62133443 ~ 62241240 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacatcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtactaatactaccacacatcattacacatcaacaacagggtttggtactactactaccacacatcaactaCAGGGTtgggtactaatactaccacacatcaacaacagggtttgttactaatactaccacacatcaacaacagggttgggtactaatactaccacacatcattacacatcaacaacagggtttggtactaatactaccacacatcattcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtactaatactaccacacatcattcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtactaatactaccacacatcaacaacagggttgggtactaatactaccacacatcattacacatcaacaacagggtttggtacaaTATCTCCAGTGTTTCATGTCTAAATAATATTGTGTTGTTACTCACTAGGGAGGTgaatctctgtctccatcttctcATTGATCTGGCTCTGTTGGACTCTGCAGGTAAAGCGGTTGGTGTCAGTCTCCTGGACAATGACATGTTGTTTGACTGTGTAGAATCCCTTGGAGTCTTTATCTATCTCAGGAGGACCAGCAGAGAGATGGACTCCTTTACTGTCCAGCCACACCAGCTCAGGCTCAGGGTGCCATCCTTCTGTTTCACACAGCagacccatccctccctctctgtgtccctcaATGGACACCACTGGCTTGGATCCTACagctacagacacacagacagactggatGTTAACTGGTGACAGGCTGTGAACAAATAGACACATACTGTGTCCAGTAATATGAAGGAAAGAGGTGATGTCATTGTACTGTAGTGAGATTATTACATTAACATGAAAATAAACCTCACCTTTAACGAGGACTTGAACAGTGAAATCATCATACCAGCTCTTTGACTGAATTAAGCATTTGTAACGTCCCTCATCAGTGCCTTGTACCCTGGTCAGTTTCAAAGAGGTGTTGCCCCTCCATAGTTCCTCTTCATACAGTGAAGTTCTTCCACTATAGAAGAGAATCTGATCCTCTCGTATGATTCTGTGGTTTTGGTAACGAAAGACACGACCGTCTAAGAAGTCCAGGTTCAGCCAGTCCACTGTCATGTCCTCAGCGCTGATGTTGGGTTTGAGGTAACAGGGCAGAATGATGTCATCACCAGCCACAGCAACAATGGAATCAGATGGACCAAGAACCTCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160263 lncRNA upstream 1803 62132232 ~ 62132715 (+) True G1888376
TU2160226 lncRNA upstream 2632 62130913 ~ 62131886 (+) True G1888352
TU2160261 lncRNA upstream 4670 62127787 ~ 62129848 (+) True G1888374
TU2160210 lncRNA upstream 21101 62112502 ~ 62113417 (+) True LOC110531647
TU2160227 lncRNA upstream 54143 62078013 ~ 62080375 (+) False LOC110531647
TU2160286 lncRNA downstream 15139 62151657 ~ 62152414 (+) True G1888388
TU2160301 lncRNA downstream 19403 62155921 ~ 62156421 (+) True G1888391
TU2160304 lncRNA downstream 21772 62158290 ~ 62191187 (+) True G1888392
TU2160318 lncRNA downstream 56730 62193248 ~ 62194292 (+) True G1888403
TU2160325 lncRNA downstream 123008 62259526 ~ 62262559 (+) True G1888408
XM_036960967.1 mRNA upstream 20286 62078017 ~ 62114232 (+) False LOC110531647
XM_036961008.1 mRNA downstream 155221 62291739 ~ 62339471 (+) True LOC110516194
XM_036961003.1 mRNA downstream 206883 62343401 ~ 62414422 (+) False LOC118936589
XM_036961007.1 mRNA downstream 207396 62343914 ~ 62414422 (+) False LOC118936589
XM_036961006.1 mRNA downstream 207399 62343917 ~ 62414422 (+) False LOC118936589
XM_036961004.1 mRNA downstream 207536 62344054 ~ 62414422 (+) False LOC118936589
TU2160160 other upstream 206661 61926746 ~ 61927857 (+) True G1888298
TU2159617 other upstream 856755 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 1963738 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 2346529 59783986 ~ 59787989 (+) True G1886561
TU2158067 other upstream 2348423 59774662 ~ 59786095 (+) True G1886560
TU2160531 other downstream 428007 62564525 ~ 62565083 (+) True G1888544

Expression Profile