RNA id: TU2160286


Basic Information

Item Value
RNA id TU2160286
length 392
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G1888388
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62151657 ~ 62152414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTCAGAAATCGTACATGTACAAAAACATCAGTTAAGCCGGCCAGAGCCAACTGCTGCCGGTGGGGTGGTTTGCTTTGCTGTTTTACATGAGAGCATGTGGACTTGATTGTGTGCATGAGGGTAGTGTTTTGGGATCTTGGAGCCTTAAGTGGGCCAAGGAAAAGAAGAAGCATCAGTAGAGTTTACAGTCTCTGGAGTACCAAGGAGAAGAAGAAGCATCAATAGAGTTTACAGTCTCTGGGGAACCAAGGAGAATAAGGAGCATCAACAGAGTTTACAGTCTCTGGAGTACCAAGGAGAAGAAGGAGCATCAACAGAGTTTACAGTCTCTGGAGGACCAAGGAGAAGAACAAGACCCGACCAGGACCTCCATAATGTAGTCCAGAGTCA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160273 lncRNA upstream 15139 62134518 ~ 62136518 (+) False G1888377
TU2160263 lncRNA upstream 18942 62132232 ~ 62132715 (+) True G1888376
TU2160226 lncRNA upstream 19771 62130913 ~ 62131886 (+) True G1888352
TU2160261 lncRNA upstream 21809 62127787 ~ 62129848 (+) True G1888374
TU2160210 lncRNA upstream 38240 62112502 ~ 62113417 (+) True LOC110531647
TU2160301 lncRNA downstream 3507 62155921 ~ 62156421 (+) True G1888391
TU2160304 lncRNA downstream 5876 62158290 ~ 62191187 (+) True G1888392
TU2160318 lncRNA downstream 40834 62193248 ~ 62194292 (+) True G1888403
TU2160325 lncRNA downstream 107112 62259526 ~ 62262559 (+) True G1888408
TU2160342 lncRNA downstream 118181 62270595 ~ 62271591 (+) True G1888425
XM_036960967.1 mRNA upstream 37425 62078017 ~ 62114232 (+) False LOC110531647
XM_036961008.1 mRNA downstream 139325 62291739 ~ 62339471 (+) True LOC110516194
XM_036961003.1 mRNA downstream 190987 62343401 ~ 62414422 (+) False LOC118936589
XM_036961007.1 mRNA downstream 191500 62343914 ~ 62414422 (+) False LOC118936589
XM_036961006.1 mRNA downstream 191503 62343917 ~ 62414422 (+) False LOC118936589
XM_036961004.1 mRNA downstream 191640 62344054 ~ 62414422 (+) False LOC118936589
TU2160160 other upstream 223800 61926746 ~ 61927857 (+) True G1888298
TU2159617 other upstream 873894 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 1980877 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 2363668 59783986 ~ 59787989 (+) True G1886561
TU2158067 other upstream 2365562 59774662 ~ 59786095 (+) True G1886560
TU2160531 other downstream 412111 62564525 ~ 62565083 (+) True G1888544

Expression Profile