RNA id: TU2160865


Basic Information

Item Value
RNA id TU2160865
length 481
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1888831
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62165392 ~ 62166459 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caagttgagaacaagttctcatttacaattgcgacctggccaagataaagcaaagcagttcgacacatacaacgacacagacttacacatggagtaaaacaaacatacagtcaataatacagtataaacaagtctatagacgatgtgagcaaatgaggtgagataagggaggtaaaggcaaaaaaaaaggccatggtggcaaagtaaatacaatatagcaagtaaaacactggaatggtagatttgtagcggaagaatgtgcaaagtagaaataaaaaggatgctttgttgtgaaataggaagccaattctagatttaactttggattggagatgtttgatatgggtctggaaggagagtttacagtctattgATTGTatctgtcacgactcctaccgaaggtggctccccttcccgttctggtggtgttcggcggtcgtcgtcaccggcctactagctgccactgatccccccccccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160860 lncRNA downstream 10837 62152136 ~ 62154555 (-) False LOC118943840
TU2160830 lncRNA downstream 51171 62110846 ~ 62114221 (-) True G1888806
TU2160836 lncRNA downstream 82012 62080685 ~ 62083380 (-) True G1888812
TU2160785 lncRNA downstream 95881 62060287 ~ 62069511 (-) True G1888766
TU2160782 lncRNA downstream 106242 62057396 ~ 62059150 (-) True G1888763
TU2160866 lncRNA upstream 2312 62168771 ~ 62222170 (-) False G1888832
TU2160777 lncRNA upstream 33131 62199590 ~ 62241532 (-) False G1888761
TU2160779 lncRNA upstream 33131 62199590 ~ 62241532 (-) True G1888761
TU2160867 lncRNA upstream 55078 62221537 ~ 62222170 (-) True G1888832
TU2160894 lncRNA upstream 101126 62267585 ~ 62268415 (-) False LOC110532867
LOC118943840 mRNA downstream 1068 62153905 ~ 62164324 (-) False LOC118943840
XM_036960980.1 mRNA downstream 17664 62119930 ~ 62147728 (-) False LOC118943934
XM_036960982.1 mRNA downstream 17664 62119930 ~ 62147728 (-) True LOC118943934
XM_036960986.1 mRNA downstream 19329 62119930 ~ 62146063 (-) False LOC118943934
XM_036960990.1 mRNA upstream 1118 62167577 ~ 62202550 (-) False LOC118943935
XM_036960989.1 mRNA upstream 1118 62167577 ~ 62202628 (-) True LOC118943935
XM_036960991.1 mRNA upstream 40802 62207261 ~ 62209682 (-) False LOC118943936
XM_036960992.1 mRNA upstream 40802 62207261 ~ 62209682 (-) True LOC118943936
XM_036960977.1 mRNA upstream 54442 62220901 ~ 62242704 (-) False LOC118943933
TU2160862 other downstream 3003 62155228 ~ 62162389 (-) False LOC118943840
TU2160863 other downstream 3003 62155228 ~ 62162389 (-) True LOC118943840
TU2159535 other downstream 1014222 61150056 ~ 61151170 (-) False G1887761
TU2159536 other downstream 1014222 61150056 ~ 61151170 (-) False G1887761
TU2159537 other downstream 1014222 61150056 ~ 61151170 (-) False G1887761
TU2160887 other upstream 94378 62260837 ~ 62267505 (-) True G1888836
TU2160891 other upstream 103163 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other upstream 103282 62269741 ~ 62273827 (-) True LOC110532867

Expression Profile