RNA id: TU2160867


Basic Information

Item Value
RNA id TU2160867
length 327
lncRNA type intronic
GC content 0.34
exon number 3
gene id G1888832
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62168771 ~ 62222170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgatgtcattgtgtttaccatagtgtattataccactgatgtcatgatgtcattgtgtttaccatagtgtattataccactgatgttgatgtcatgatgtcattgtgtttaccatagtgttttataccactgatgttgatgtcatgatgtcattgtgtttaccatagtgttttATAACCAGTGatgttgtcattgtgtttaccatagtgcattataccactgatgttgatgtcatgatgtcattgtgtttaccatagtgtattataccactgatgatgatgtcattgtgtttaccatagtgttttataccactgatgttgatgtcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160788 lncRNA downstream 1987 62118484 ~ 62219550 (-) True G1888769
TU2160865 lncRNA downstream 55078 62165392 ~ 62166459 (-) True G1888831
TU2160860 lncRNA downstream 66982 62152136 ~ 62154555 (-) False LOC118943840
TU2160830 lncRNA downstream 107316 62110846 ~ 62114221 (-) True G1888806
TU2160836 lncRNA downstream 138157 62080685 ~ 62083380 (-) True G1888812
TU2160894 lncRNA upstream 45415 62267585 ~ 62268415 (-) False LOC110532867
TU2160872 lncRNA upstream 54269 62276439 ~ 62280979 (-) False LOC118943938
TU2160875 lncRNA upstream 54269 62276439 ~ 62280979 (-) False LOC118943938
TU2160880 lncRNA upstream 54269 62276439 ~ 62280979 (-) False LOC118943938
TU2160883 lncRNA upstream 54269 62276439 ~ 62310445 (-) False LOC118943938
XM_036960991.1 mRNA downstream 11855 62207261 ~ 62209682 (-) False LOC118943936
XM_036960992.1 mRNA downstream 11855 62207261 ~ 62209682 (-) True LOC118943936
XM_036960989.1 mRNA downstream 18909 62167577 ~ 62202628 (-) True LOC118943935
XM_036960990.1 mRNA downstream 18987 62167577 ~ 62202550 (-) False LOC118943935
LOC118943840 mRNA downstream 57213 62153905 ~ 62164324 (-) False LOC118943840
XM_036960997.1 mRNA upstream 35948 62258118 ~ 62273941 (-) False LOC110532867
XM_036960998.1 mRNA upstream 35948 62258118 ~ 62273941 (-) False LOC110532867
XM_036960999.1 mRNA upstream 35948 62258118 ~ 62273944 (-) False LOC110532867
XM_036960996.1 mRNA upstream 35949 62258119 ~ 62273938 (-) False LOC110532867
XM_036961001.1 mRNA upstream 37317 62259487 ~ 62262338 (-) False LOC118943937
TU2160862 other downstream 59148 62155228 ~ 62162389 (-) False LOC118943840
TU2160863 other downstream 59148 62155228 ~ 62162389 (-) True LOC118943840
TU2159536 other downstream 1070367 61150056 ~ 61151170 (-) False G1887761
TU2160887 other upstream 38667 62260837 ~ 62267505 (-) True G1888836
TU2160891 other upstream 47452 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other upstream 47571 62269741 ~ 62273827 (-) True LOC110532867

Expression Profile