RNA id: TU2160318


Basic Information

Item Value
RNA id TU2160318
length 1010
lncRNA type intronic
GC content 0.39
exon number 2
gene id G1888403
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62193248 ~ 62194292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgttaatactaccacacatcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtactaatactaacacacatcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtgttaatactaccacacatcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggcactaatactaccacacatcattacacatcaacaacagggtttggtactaatactaccagacatcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtactaatactaccacacatcattacacatcaacaacagggtttggtactaatactaccacacatcattacacatcaacaacagggtttggtactaatactaccacacttcaacaacagggtttggcactaatactaccacacatcattacacatcaacaacagggtttggtactaataataccacacatcattacacatcaacaacagggtttggtactaatactaccacacatcattacacatcaacaacagggtttggtactaatactaccacacatcattacacatcaacaacagggtttggtacgaatactaccacacatcattacacatcaacaacagggtttggtactaatactaccacacttcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtactaatactaccacacatcaaaacacatcaacaacagggcttggtactaatactaccacacatcaacaacagggtttggcactaatactaccacacatcattacacaccaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtactaatactaccacacatcattacacaccaacaacagggtttggtactaatactaccacacatcattacacatcaacaacagggtctgGTACCAATaatacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160304 lncRNA upstream 2061 62158290 ~ 62191187 (+) True G1888392
TU2160258 lncRNA upstream 14668 62122757 ~ 62178580 (+) True G1888373
TU2160301 lncRNA upstream 36827 62155921 ~ 62156421 (+) True G1888391
TU2160286 lncRNA upstream 40834 62151657 ~ 62152414 (+) True G1888388
TU2160273 lncRNA upstream 56730 62134518 ~ 62136518 (+) False G1888377
TU2160325 lncRNA downstream 65234 62259526 ~ 62262559 (+) True G1888408
TU2160342 lncRNA downstream 76303 62270595 ~ 62271591 (+) True G1888425
TU2160344 lncRNA downstream 80750 62275042 ~ 62275258 (+) True G1888427
TU2160363 lncRNA downstream 82167 62276459 ~ 62285346 (+) True G1888429
TU2160393 lncRNA downstream 108355 62302647 ~ 62303241 (+) True G1888450
XM_036960967.1 mRNA upstream 79016 62078017 ~ 62114232 (+) False LOC110531647
XM_036961008.1 mRNA downstream 97447 62291739 ~ 62339471 (+) True LOC110516194
XM_036961003.1 mRNA downstream 149109 62343401 ~ 62414422 (+) False LOC118936589
XM_036961007.1 mRNA downstream 149622 62343914 ~ 62414422 (+) False LOC118936589
XM_036961006.1 mRNA downstream 149625 62343917 ~ 62414422 (+) False LOC118936589
XM_036961004.1 mRNA downstream 149762 62344054 ~ 62414422 (+) False LOC118936589
TU2160160 other upstream 265391 61926746 ~ 61927857 (+) True G1888298
TU2159617 other upstream 915485 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 2022468 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 2405259 59783986 ~ 59787989 (+) True G1886561
TU2158067 other upstream 2407153 59774662 ~ 59786095 (+) True G1886560
TU2160531 other downstream 370233 62564525 ~ 62565083 (+) True G1888544

Expression Profile