RNA id: TU2160779


Basic Information

Item Value
RNA id TU2160779
length 850
lncRNA type read_through
GC content 0.43
exon number 3
gene id G1888761
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62199590 ~ 62241532 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAACTTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTAATTCAGTCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCATtgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTcctgagacacacagagacttcaATGGATTCTACAGAGTCAAACAATATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAAACGGATCAATgagaagatggagacagagattcACCTCCCTAGTGAGTAACACCATCATATTATTTAGACATGAAACACTGGAGATATTGATGTGTTAATGTCCAGTATGTGTTTTAACCAAAGGCTTTGAGACGACAATACAAAAGGATAGTATTTATTATGACATACTCCACTgctgtgtggtagtattagtaccaaaccctgttgttgatgtgtggtagtattagtaccaaaccctgttgttgatgtgtaatgatgtgtggtagtattagtaccaaaccctgttgttgatgtgtggtagtattagtaccaaaccctgttgttgatgtgtggtagtattagtaccaaaccctgttgttgatgtgtggtagtattagtaccaaaccctgttgttgatgtgtggtagtattagtaccaaaccccgttgttgatgtgtaatgatgtgtggtagtattagtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160865 lncRNA downstream 33131 62165392 ~ 62166459 (-) True G1888831
TU2160860 lncRNA downstream 45035 62152136 ~ 62154555 (-) False LOC118943840
TU2160830 lncRNA downstream 85369 62110846 ~ 62114221 (-) True G1888806
TU2160836 lncRNA downstream 116210 62080685 ~ 62083380 (-) True G1888812
TU2160785 lncRNA downstream 130079 62060287 ~ 62069511 (-) True G1888766
TU2160894 lncRNA upstream 26053 62267585 ~ 62268415 (-) False LOC110532867
TU2160872 lncRNA upstream 34907 62276439 ~ 62280979 (-) False LOC118943938
TU2160875 lncRNA upstream 34907 62276439 ~ 62280979 (-) False LOC118943938
TU2160880 lncRNA upstream 34907 62276439 ~ 62280979 (-) False LOC118943938
TU2160883 lncRNA upstream 34907 62276439 ~ 62310445 (-) False LOC118943938
LOC118943840 mRNA downstream 35266 62153905 ~ 62164324 (-) False LOC118943840
XM_036960980.1 mRNA downstream 51862 62119930 ~ 62147728 (-) False LOC118943934
XM_036960982.1 mRNA downstream 51862 62119930 ~ 62147728 (-) True LOC118943934
XM_036960987.1 mRNA downstream 53527 62119930 ~ 62146063 (-) False LOC118943934
XM_036960997.1 mRNA upstream 16586 62258118 ~ 62273941 (-) False LOC110532867
XM_036960998.1 mRNA upstream 16586 62258118 ~ 62273941 (-) False LOC110532867
XM_036960999.1 mRNA upstream 16586 62258118 ~ 62273944 (-) False LOC110532867
XM_036960996.1 mRNA upstream 16587 62258119 ~ 62273938 (-) False LOC110532867
XM_036961001.1 mRNA upstream 17955 62259487 ~ 62262338 (-) False LOC118943937
TU2160862 other downstream 37201 62155228 ~ 62162389 (-) False LOC118943840
TU2160863 other downstream 37201 62155228 ~ 62162389 (-) True LOC118943840
TU2159536 other downstream 1048420 61150056 ~ 61151170 (-) False G1887761
TU2160887 other upstream 19305 62260837 ~ 62267505 (-) True G1888836
TU2160891 other upstream 28090 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other upstream 28209 62269741 ~ 62273827 (-) True LOC110532867

Expression Profile