RNA id: TU2160342


Basic Information

Item Value
RNA id TU2160342
length 639
lncRNA type intronic
GC content 0.35
exon number 4
gene id G1888425
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62270595 ~ 62271591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTTGAGTACAGAACGGCCTACTAGAAGACAGGTTGAGTACAGAACGGCCTACTAGAAGACAGGTTGAGTACAGAACGACCTACTAGAAGACAGGTTGAatgttcaatcaatcaaataaatgTGATGGTGGGAGAAAAATAAAAGGAAGATCTTGTTCTACATAGTTATATGTCATTATTAACAGACAGTAGGTCTTGTTCTACATAGTTATATGTCATTATTAACAGACAGTAGGTCTTGTTCTACATAGTTATATGTCATTATTAACAGACAGTAGGTCTTGTTCTACATAGTCATATGTCATTATTAACAGACAGTAGGTCTTGTTCTACATAGTCATATGTCATTATTAACAGACAGTAGGTCTTGTTCTACATAGTTATATGTCATTATTAACAGACAGTAGGCCTTGTTCTACATAGCCAAATGTCATTATTAACAGACCTACATGCTCTTCCTATTGTAAgttaaaagtaacaaataaagcAGAGTAAGTTTGGCTAAACAGAGCGACCATTTTACTCACATATGCGCCTAAATATGAAGCTGTCTGACCTGGAATTCTATCCTAGGAGCACCAGTGTACCAAGACAGTTTTGGAATTCTAGCTGTAATATATTTCATTGTGCTTCTATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160325 lncRNA upstream 8036 62259526 ~ 62262559 (+) True G1888408
TU2160275 lncRNA upstream 29355 62134518 ~ 62241240 (+) True G1888377
TU2160264 lncRNA upstream 69704 62134518 ~ 62200891 (+) False G1888377
TU2160266 lncRNA upstream 72282 62133443 ~ 62198313 (+) False G1888377
TU2160344 lncRNA downstream 3451 62275042 ~ 62275258 (+) True G1888427
TU2160363 lncRNA downstream 4868 62276459 ~ 62285346 (+) True G1888429
TU2160393 lncRNA downstream 31056 62302647 ~ 62303241 (+) True G1888450
TU2160397 lncRNA downstream 50769 62322360 ~ 62382279 (+) True G1888454
TU2160379 lncRNA downstream 57426 62329017 ~ 62330287 (+) True G1888439
XM_036960967.1 mRNA upstream 156363 62078017 ~ 62114232 (+) False LOC110531647
XM_036961008.1 mRNA downstream 20148 62291739 ~ 62339471 (+) True LOC110516194
XM_036961003.1 mRNA downstream 71810 62343401 ~ 62414422 (+) False LOC118936589
XM_036961007.1 mRNA downstream 72323 62343914 ~ 62414422 (+) False LOC118936589
XM_036961006.1 mRNA downstream 72326 62343917 ~ 62414422 (+) False LOC118936589
XM_036961004.1 mRNA downstream 72463 62344054 ~ 62414422 (+) False LOC118936589
TU2160160 other upstream 342738 61926746 ~ 61927857 (+) True G1888298
TU2159617 other upstream 992832 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 2099815 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 2482606 59783986 ~ 59787989 (+) True G1886561
TU2158067 other upstream 2484500 59774662 ~ 59786095 (+) True G1886560
TU2160531 other downstream 292934 62564525 ~ 62565083 (+) True G1888544

Expression Profile