RNA id: TU2160940


Basic Information

Item Value
RNA id TU2160940
length 529
lncRNA type intronic
GC content 0.47
exon number 3
gene id G1888879
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62347247 ~ 62347941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgaataaccaccacgctgcgttttggtccgcctctccttcacctcaagaaaaccgttacagaaagagaggaaagagaaagatagTTTCAACATCAACAAGAGGCTCTTCATTAAATACTGTAGATATTTATTTTACTGGGTTTTCTTAATCTATTTCTTATATTATTTTCTTTCTACAGTCCACCCTGTCACCCTACTCCTCCTTCTCTGAGTGTTCACCACCCTACTCCTCCTTCTCTGAGTGTTCACCACCCTACTCCTCCTTCTCTGAATGTTCACCACCCTACTCCTCCTTCTCTGAGTGTTCACCACCCTACTCCTCCTTCTCTGAGTGTTCACCACCCTACTCCTCCTTCTCTGAGTGTTTACCACCCTACTCCTCCTTCTCTGAGTGTTCACCACCCTGTCACCCTACTCCTCCTTCTCTGAGTGTTTACCACCCTACTCCTCCTTCTCTGAGTGTTTACCACCCTACTCCTCCTTCTCTGAGTGTTCACCACCCTACTCCTCCTTCTCTGAGTGTTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160922 lncRNA downstream 30293 62316606 ~ 62316954 (-) True G1888862
TU2160883 lncRNA downstream 36802 62276439 ~ 62310445 (-) False LOC118943938
TU2160885 lncRNA downstream 55752 62276439 ~ 62291495 (-) True LOC118943938
TU2160872 lncRNA downstream 66268 62276439 ~ 62280979 (-) False LOC118943938
TU2160875 lncRNA downstream 66268 62276439 ~ 62280979 (-) False LOC118943938
TU2160960 lncRNA upstream 31746 62379687 ~ 62381107 (-) True G1888893
TU2160974 lncRNA upstream 49527 62397468 ~ 62398248 (-) False G1888907
TU2160977 lncRNA upstream 49527 62397468 ~ 62398248 (-) False G1888907
TU2160975 lncRNA upstream 49738 62397679 ~ 62398248 (-) True G1888907
TU2160984 lncRNA upstream 59260 62407201 ~ 62407850 (-) True G1888913
XM_036961010.1 mRNA downstream 54226 62285212 ~ 62293021 (-) False LOC118943938
XM_036961009.1 mRNA downstream 54297 62283337 ~ 62292950 (-) False LOC118943938
XM_036961000.1 mRNA downstream 73309 62264255 ~ 62273938 (-) False LOC110532867
XM_036961001.1 mRNA downstream 84909 62259487 ~ 62262338 (-) False LOC118943937
XM_036961014.1 mRNA upstream 143940 62491881 ~ 62559025 (-) False LOC118943941
XM_036961017.1 mRNA upstream 144166 62492107 ~ 62544306 (-) False LOC118943941
XM_036961013.1 mRNA upstream 144166 62492107 ~ 62559021 (-) False LOC118943941
XM_036961015.1 mRNA upstream 144166 62492107 ~ 62560536 (-) True LOC118943941
XM_036961018.1 mRNA upstream 212737 62560678 ~ 62570675 (-) True LOC118936590
TU2160891 other downstream 73420 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other downstream 73420 62269741 ~ 62273827 (-) True LOC110532867
TU2160887 other downstream 79742 62260837 ~ 62267505 (-) True G1888836
TU2160862 other downstream 184858 62155228 ~ 62162389 (-) False LOC118943840

Expression Profile