RNA id: TU2160948


Basic Information

Item Value
RNA id TU2160948
length 3361
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G1888885
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62411505 ~ 62415605 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaaaccagtcagtatctggtgggacCATCGTTTGCCtaatgcagcgtgacacatctccttcacatagagttgatcaggctgttgattgtggccagaGGAATGTTGTCCCGCTCCTCTTCCATGGCTGGGGGAAGTTGAtgaatattggcgggaactggaacacgccatCCCAAAGATGCTCAATGGGTGGTGAGATGTCTGGTGagcatgcaggccatggaagaactggaacattttcagcttccaggaattgtgtacagatccttgtgacatggatTCAGCATcaccatgctgaaacatgaggtgatggcggcggatgaatggcacgacaatgggccttaggatctcgtcacggcatctctgtgcattcaaattacaatcaataaatgcaattgtgtttgttgtccgtagcttaggcctgcccataccacaacaccaccagcaccatggggcactctgttcacaacattgacagcaaactgctcacccacacgaAGCCAGACACACTGTCTGCTATCTGCCCGGTATAGTTGAAACCAGGAtacatctgtgaagagcacacttctccattgtgccagtggccatcaaaggtgagcatttgcccactgaagtgggtaacgatgccgaactgcagtcaggtcaggaccctgaggcggtttctgacagtttgtgcacaAATAATTTTTTTGTGcagacccagtttcatcagctgtccagttggctggtctcagacgatcccacaggtgaagaagccggatgtggaggtcctgggctagcgtggttacacgtggtctgtggttgtgaggccggttggacggaatgccaaattctctaaaatgatgttggaggccagtacccataggcctctggtaaaaaatgagtgcactatgtagagaatagggtgccatttgggacgcatcctatACATTATGGCAGCTAACACGTTACCTGAACCCTATGCCCTGGCATAAGGCCTACATATCATTGACAAAACAAATGACATGAATAGTCTTAAAATGATCTATAAGCTAGTTGGCTAGTGGTAACTAGCTGACCTAGATAACAGTTtggtgtcatgacagtgttaagTCAGTTGTCATAAGCTGACataacaggttatatatatatatatatattatgcctGTTATAACAGGGCTACAATCTAATGAAGGATTTGATGGATTTCCAACCCCAACTCCAGTTTGTGTTATGTCAGTCGTCATAAGATAAGTCACAAGTCATCTGCAGTCACACGTGTTTATAACACCTGTTATGTCATTTGTAAGACACATACATCCCAGATGAATGTGGATGTGTCCCTTAAGATGTGGGAAATAGCAGCACAAAGCAAAACACATAAAAGGCAACGGAGCGTGAGCAAAACAGGAAACACAATAAATATGGCGTTCCACATGAATTAACACTCAATAAACTCCAAGGTTCAGCCGTGATGGTCCTTGACCTCTTGACCCCAATGCGATACATATAAATATTTATGTCACTTTCCTCAATTGAAACTTGATTTGtataacactctctctctctctataatacaAACTAGACTTTTCTAAAATATACCACGTTAAACAAGGTCGTTTAAGAATGCACCCCAAATGccaaccctattccttatatatatatagtgcactacttttgaccagggcccataggggtttGGTCaaaaaaaatagtgcactatgtagggaatagggtgccatttgggaagcactgTAAATGTAACTTCTGCAGTTACCTTGAAAAGTTGCCTTACGGTCTAAAATTCACAATTCTTCAGAAAACATCAATCAATTTCAGTAACACACATGCTGGTGTAGATGCTTTAGCTTCATAAGTTAACATGGTACCTTCTCTATTATCATATTTATCAACCAGAAACCGAATGACGTGAACTAGCTCCTTCTGCCGTGAGCTCGTTTCAGCCTTTTGTCTGTTCAAGTCATCAGCACTTTGTCGGTTCGATGCGTGTAAACATATTTCTCATTCAGTAATAATGGTCAATGGCACGACTTCGAAGGATGGACACTAGAAATACAAGATACGAAATCTCAGAACCCCCGGAATACCACGGGCTGCTGTCAATCGTCCCCAAACCCAATAGAAACTCTGAAATATATAGAGAGCTCCCATTGGATCAGAGAAATGTATTGATCCCGGCTCAGGGAAGTTAAGAGACCTCAATATCTGTTGTTGGACACTTTGATTTCACatatggaataatacattataatatacCAGCAGTAATAAAACACAATGAGTGGACATGCTGGAGAGATGTCATTAAAACAGAACTGACTGGATACTCTTTGCTGTGGTACATGTCCAAGGGCTTTACCCAGCAGCCACCACTCTGTCCAGCAGCAGGGGGGTGATGGGAAGACAAAAGTAATTAAAAGCTGATGACCttctcaggtaacacacacacacacacacacacacaatttattgTTGTATATTCATGTATTTTTAgatgtgtgtgactgtccttgtctatcagtgtaccagtgttttgttacttgtcatgttgtgtgttttaggtggaccccaggaagagtagctgctgcttctgcaaaagatAACAGGGATCCCAATAAACAAACACGACCACTGACAGAACTGTCAACCACGACGGGACAAGCCCCATGCAATCACCGTCAGGACAATCAATCAAACTGCCCTTTTTTATAAGGGGTATGAGGCAAGCACAGGCACACAACAGACTCCAGAGATACTGCATTCCACCAATAACCAGAAGCCAAGGCTACTTCAGCAGCAAGCCAATACTGGGAGGTTAGATCACCTGGTAACCAATAGAGAGACAGGGTCACCACTTCCTGTCAAAACAGGCAACAGGAAGCAAAACAGAACAAAATACAGATAAGAGACCAGAGCTCATATCCACAAATAACCTCAGAATTGGTaggctggtctaggatcaggtcccctcctgtccatgtaatcttattcattatgatttaaatggcaaaactggtcctagatcagcacttccaCTCTGCTTTATGAATTCAGACCCAGAGGCCCCTGGAAATAGCGGTGGACAAAAAtaagtttagttttttttttgtccGACATTGAGTTTAGCATTTCAGTTCATCAAAATATACTTCTATCCATACTGTAGTGCAGATGGGATAGCTCCTCCCCCGTGGGTTCTACTGTCCACCTTCTGCTAGTCGCTCATTGGTTGGTGGGCGTGCCATGATGAGGTTAGTCAGTTGTCTGGGAGGTTTGCTCGCATGCTAATCGCACGGACGTGGACATCGTTCTGTGGCCGAGCGCCTGGACAGAGCCGGGCCGAGCGCCTGGACAGAGCCGGGCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160984 lncRNA downstream 3655 62407201 ~ 62407850 (-) True G1888913
TU2160974 lncRNA downstream 13257 62397468 ~ 62398248 (-) False G1888907
TU2160977 lncRNA downstream 13257 62397468 ~ 62398248 (-) False G1888907
TU2160975 lncRNA downstream 13257 62397679 ~ 62398248 (-) True G1888907
TU2160960 lncRNA downstream 30398 62379687 ~ 62381107 (-) True G1888893
TU2160992 lncRNA upstream 4943 62420548 ~ 62420758 (-) True G1888918
TU2161032 lncRNA upstream 66120 62481725 ~ 62484288 (-) False G1888945
TU2161033 lncRNA upstream 66120 62481725 ~ 62484288 (-) True G1888945
TU2161038 lncRNA upstream 79536 62495141 ~ 62495611 (-) True G1888948
TU2161040 lncRNA upstream 84057 62499662 ~ 62500188 (-) True G1888950
XM_036961010.1 mRNA downstream 118484 62285212 ~ 62293021 (-) False LOC118943938
XM_036961009.1 mRNA downstream 118555 62283337 ~ 62292950 (-) False LOC118943938
XM_036961000.1 mRNA downstream 137567 62264255 ~ 62273938 (-) False LOC110532867
XM_036961001.1 mRNA downstream 149167 62259487 ~ 62262338 (-) False LOC118943937
XM_036961014.1 mRNA upstream 76276 62491881 ~ 62559025 (-) False LOC118943941
XM_036961017.1 mRNA upstream 76502 62492107 ~ 62544306 (-) False LOC118943941
XM_036961013.1 mRNA upstream 76502 62492107 ~ 62559021 (-) False LOC118943941
XM_036961015.1 mRNA upstream 76502 62492107 ~ 62560536 (-) True LOC118943941
XM_036961018.1 mRNA upstream 145073 62560678 ~ 62570675 (-) True LOC118936590
TU2160891 other downstream 137678 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other downstream 137678 62269741 ~ 62273827 (-) True LOC110532867
TU2160887 other downstream 144000 62260837 ~ 62267505 (-) True G1888836
TU2160862 other downstream 249116 62155228 ~ 62162389 (-) False LOC118943840

Expression Profile