RNA id: TU2161063


Basic Information

Item Value
RNA id TU2161063
length 288
lncRNA type intronic
GC content 0.43
exon number 2
gene id G1888968
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62547641 ~ 62552485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catctacaacatcatgttatagggagacccatcatctacaacatcatctacaacatcatgttatagggagacccatcatctacaaccccatgttatagggagacccatcatctacaacatcaTCTACAACATCATgttatagggagacccatcatctacaacatcatgttatagggagacccatcatctacaaccccatgttatagggagacccatcatctacagtcccatgttatagggagacccatcatctacagtcccatgttatagggagacccatcatctaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2161062 lncRNA downstream 1028 62547641 ~ 62550978 (-) False G1888968
TU2161043 lncRNA downstream 48823 62502146 ~ 62503183 (-) True G1888952
TU2161040 lncRNA downstream 51818 62499662 ~ 62500188 (-) True G1888950
TU2161038 lncRNA downstream 56395 62495141 ~ 62495611 (-) True G1888948
TU2161032 lncRNA downstream 67718 62481725 ~ 62484288 (-) False G1888945
TU2161068 lncRNA upstream 24215 62576700 ~ 62576943 (-) True G1888973
TU2161227 lncRNA upstream 115030 62667515 ~ 62670538 (-) True G1889120
TU2161229 lncRNA upstream 116335 62668820 ~ 62669697 (-) True G1889121
TU2161235 lncRNA upstream 140043 62692528 ~ 62692943 (-) True G1889127
TU2161243 lncRNA upstream 164773 62717258 ~ 62717648 (-) True G1889133
XM_036961017.1 mRNA downstream 7700 62492107 ~ 62544306 (-) False LOC118943941
XM_036961010.1 mRNA downstream 258985 62285212 ~ 62293021 (-) False LOC118943938
XM_036961009.1 mRNA downstream 259056 62283337 ~ 62292950 (-) False LOC118943938
XM_036961000.1 mRNA downstream 278068 62264255 ~ 62273938 (-) False LOC110532867
XM_036961002.1 mRNA downstream 289668 62259487 ~ 62262338 (-) True LOC118943937
XM_036961018.1 mRNA upstream 8193 62560678 ~ 62570675 (-) True LOC118936590
XM_036961031.1 mRNA upstream 217550 62770035 ~ 62776649 (-) False LOC118943942
XM_036961030.1 mRNA upstream 217550 62770035 ~ 62776655 (-) True LOC118943942
XM_036961032.1 mRNA upstream 228614 62781099 ~ 62876729 (-) False LOC118943943
TU2160891 other downstream 278179 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other downstream 278179 62269741 ~ 62273827 (-) True LOC110532867
TU2160887 other downstream 284501 62260837 ~ 62267505 (-) True G1888836
TU2160862 other downstream 389617 62155228 ~ 62162389 (-) False LOC118943840

Expression Profile