RNA id: TU2161068


Basic Information

Item Value
RNA id TU2161068
length 244
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1888973
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62576700 ~ 62576943 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatttattcctacctcatgccatcatcctgaaaggatgggacaaCACCACTTagcacaccctgtaactcttccgGTCTggcacacccaaatacctctctacagctgccaccacaacctccatTTTCTGCGACTTCagttccatccctgcagtacagttgataaccattgctataaatgctaaaaatccaatcttactgaaacatatatAACTTTTTGTCCTATCCCTCTGTAGTGGTATATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2161061 lncRNA downstream 24215 62548077 ~ 62552485 (-) False G1888968
TU2161063 lncRNA downstream 24215 62552006 ~ 62552485 (-) True G1888968
TU2161062 lncRNA downstream 25722 62547641 ~ 62550978 (-) False G1888968
TU2161043 lncRNA downstream 73517 62502146 ~ 62503183 (-) True G1888952
TU2161040 lncRNA downstream 76512 62499662 ~ 62500188 (-) True G1888950
TU2161227 lncRNA upstream 90572 62667515 ~ 62670538 (-) True G1889120
TU2161229 lncRNA upstream 91877 62668820 ~ 62669697 (-) True G1889121
TU2161235 lncRNA upstream 115585 62692528 ~ 62692943 (-) True G1889127
TU2161243 lncRNA upstream 140315 62717258 ~ 62717648 (-) True G1889133
TU2161268 lncRNA upstream 205698 62782641 ~ 62783284 (-) True LOC118943943
XM_036961018.1 mRNA downstream 6025 62560678 ~ 62570675 (-) True LOC118936590
XM_036961015.1 mRNA downstream 16164 62492107 ~ 62560536 (-) True LOC118943941
XM_036961014.1 mRNA downstream 17675 62491881 ~ 62559025 (-) False LOC118943941
XM_036961013.1 mRNA downstream 17679 62492107 ~ 62559021 (-) False LOC118943941
XM_036961017.1 mRNA downstream 32394 62492107 ~ 62544306 (-) False LOC118943941
XM_036961031.1 mRNA upstream 193092 62770035 ~ 62776649 (-) False LOC118943942
XM_036961030.1 mRNA upstream 193092 62770035 ~ 62776655 (-) True LOC118943942
XM_036961032.1 mRNA upstream 204156 62781099 ~ 62876729 (-) False LOC118943943
TU2160891 other downstream 302873 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other downstream 302873 62269741 ~ 62273827 (-) True LOC110532867
TU2160887 other downstream 309195 62260837 ~ 62267505 (-) True G1888836
TU2160862 other downstream 414311 62155228 ~ 62162389 (-) False LOC118943840

Expression Profile