RNA id: TU2161235


Basic Information

Item Value
RNA id TU2161235
length 416
lncRNA type antisense_over
GC content 0.66
exon number 1
gene id G1889127
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62692528 ~ 62692943 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGGAGCCAAGCCAAGATCCAGAGCCATCAGTTCCCCCTGgcctccccccaccaccaccaccccccctgCAGGGTGCCAGGCCACAAGGACGGGCGGGATGGGGCAGGGGGCAAGCAGcgacacccctctcctctcatcgtaGAGGACCAGAGAGGAGTCGCTGAGGCCCAGTAGCAGGGTGGTTGAGGAGGGGTGGCGGCAGCAGGAGACAGGGCGCGAGGAGACGGGGATACGGGTCGCCGAGAGACGTTGGAGGCGGCCGCGGGCGCACTCGTACACACAGGCATCTGCCCAGGACGTcccggtggtggtggtggtgtgggatcCTTGGGGTCCTTCAGGCAGCTCCACGGACAGAAGCTGGTACGGCTGCACGAGACTGAAGCAGAGATCCAACAGGTCACCCTCAGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2161227 lncRNA downstream 21990 62667515 ~ 62670538 (-) True G1889120
TU2161229 lncRNA downstream 22831 62668820 ~ 62669697 (-) True G1889121
TU2161068 lncRNA downstream 115585 62576700 ~ 62576943 (-) True G1888973
TU2161061 lncRNA downstream 140043 62548077 ~ 62552485 (-) False G1888968
TU2161063 lncRNA downstream 140043 62552006 ~ 62552485 (-) True G1888968
TU2161243 lncRNA upstream 24315 62717258 ~ 62717648 (-) True G1889133
TU2161268 lncRNA upstream 89698 62782641 ~ 62783284 (-) True LOC118943943
XM_036961018.1 mRNA downstream 121853 62560678 ~ 62570675 (-) True LOC118936590
XM_036961015.1 mRNA downstream 131992 62492107 ~ 62560536 (-) True LOC118943941
XM_036961014.1 mRNA downstream 133503 62491881 ~ 62559025 (-) False LOC118943941
XM_036961031.1 mRNA upstream 77092 62770035 ~ 62776649 (-) False LOC118943942
XM_036961030.1 mRNA upstream 77092 62770035 ~ 62776655 (-) True LOC118943942
XM_036961032.1 mRNA upstream 88156 62781099 ~ 62876729 (-) False LOC118943943
TU2160891 other downstream 418701 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other downstream 418701 62269741 ~ 62273827 (-) True LOC110532867
TU2160887 other downstream 425023 62260837 ~ 62267505 (-) True G1888836
TU2160862 other downstream 530139 62155228 ~ 62162389 (-) False LOC118943840

Expression Profile