RNA id: TCONS_00053271


Basic Information

Item Value
RNA id TCONS_00053271
length 1516
RNA type mRNA
GC content 0.43
exon number 8
gene id XLOC_027001
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2655358 ~ 2666310 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCGTGTAAGTGACGTCACTGGAGTGAGACGGGACGGCAGTTGCGCGTTTGTCAGACTTTAGTGTAGTTTTCCAGAATTGTGTCTTTCGTCTGAAATTTGTCAggagattttgtttaaatCTGAAATAAAATGACGCTGCAGTGGACGGCGGTTGCAACTTTCCTGTATGTAGAGATTGCCGTTCTTATCTTCTTTTGTCTGCCGTTCATTTCTGCTAAAAGATGGCAGAAGATTTTCAAGTGGAGCATCTGGAGCCGGCTTTCCCAGTTCTGGAACAAGGGCTTCCTCGCCATGATAATAATCCTCATCGTTCTCTTTCTTGATGCTCTCCGTGAGGTCAGAAAATACTCGAACTCGGATCAGTCCAAAGATGCCAAGCTGCACCCCAACATGTTCGACCACATGCACATGAAGCTCTTCCGGGCTCAGAGGAACCTCTACATCTCCGGCTTCTCGCTCTTCCTCTGGCTggTGATGAGGAGGGTGGTCACTCTGATCAGTCAGCTGGCCACAGCTGCAGATTCTTGCGTAGATCTACAGAACCAGGTCGAAACTACCAATAAAGCTGCCAAGAAGTACATGGAGGACAACCAGATCCTCAaacagGCTCTTGCAGATGCCAAAGAAGGAGGACAAAAAGCAGATCCAGAGGAGAGCAAACGGCTGAAGGAGGAGCTGCAGAGACTGAAGGAGGAGCTGAAGACCAGCGCAgatgCTCTGAAAAAGTCAAAGTCTGATTTAGACACCATGAAGAAACAAAGTGACGGACTGACCAAAGAGTACGAGCGGCTGCTTCAGGAGCACCAGCAGCTGCAGAATCAGATGGACAGCGGAGATAAAAAAGAAAACTAGAGGAACGGACACACCACACAATGTAAATCTGCACGATAATCATCATTACGCTCAGTTCATCCTCAACACACTCACCTGACACTCCTGATGATGACTTCCTGTCAGGTCACATGATCAGAGCGGTTTCACAGTTTTCTAGCATCGTTGTTTAATAAAATGTGCAAAACTTCGTCATTTAGCTCGTCACTGGAGCGAACCTGTTAAAATGACAACTGTATACCTTATTTAAGTCTTTTTTAATAGTAATGTTTCCCCTAATATGGACAGTAATGGGTATAGAgttgttattttaaagaaactcTTCACCTTTTTGTGTaattaggctcattttacagctcttcTAGAGTTAATCAGGtgaattttactatttttttgtaatctattcagctgatctctgggatTCGCaggggcacttttagcttagcttagcataaatgattgaattggattagaccattagcgtctCGCTCAAGTAAAAGCCCAATAATTTAGATAATTTTtctgtttaaagcttgactctcttttatttacattgtgtACCAAGACTGGTGGAAAATGTAAAGTTATTTTTTAGGCTGATATAGCTAGTAaaaacttagcttagcatacatcattgaatcggactagaccattagcatctcgatcAAAAATGACCAACAAAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0070973 protein localization to endoplasmic reticulum exit site biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-468 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and protein localization to endoplasmic reticulum exit site. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human BCAP29 (B cell receptor associated protein 29).

Ensembl:

ensembl_id ENSDART00000007638

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057112 lncRNA upstream 66955 2588157 ~ 2588403 (+) True XLOC_026998
TCONS_00057531 lncRNA upstream 300169 2352780 ~ 2355189 (+) False XLOC_026995
TCONS_00057533 lncRNA downstream 236037 2902347 ~ 2904041 (+) True XLOC_027002
TCONS_00057113 lncRNA downstream 638868 3305178 ~ 3307854 (+) True XLOC_027004
TCONS_00057534 lncRNA downstream 643175 3309485 ~ 3319127 (+) False XLOC_027005
TCONS_00057535 lncRNA downstream 646221 3312531 ~ 3319127 (+) False XLOC_027005
TCONS_00057114 lncRNA downstream 646221 3312531 ~ 3319127 (+) False XLOC_027005
TCONS_00053270 mRNA upstream 12823 2637947 ~ 2642535 (+) True XLOC_027000
TCONS_00053268 mRNA upstream 31871 2619132 ~ 2623487 (+) False XLOC_026999
TCONS_00053269 mRNA upstream 31872 2620751 ~ 2623486 (+) True XLOC_026999
TCONS_00053266 mRNA upstream 146781 2482046 ~ 2508577 (+) True XLOC_026996
TCONS_00053265 mRNA upstream 365090 2269815 ~ 2290268 (+) True XLOC_026993
TCONS_00053273 mRNA downstream 621509 3287819 ~ 3290445 (+) True XLOC_027003
TCONS_00053274 mRNA downstream 646542 3312852 ~ 3338940 (+) False XLOC_027005
TCONS_00053275 mRNA downstream 692073 3358383 ~ 3385452 (+) True XLOC_027006
TCONS_00053276 mRNA downstream 723556 3389866 ~ 3398385 (+) False XLOC_027007
TCONS_00053278 mRNA downstream 772200 3438510 ~ 3446758 (+) True XLOC_027010
TCONS_00053267 other upstream 73327 2581916 ~ 2582031 (+) True XLOC_026997
TCONS_00053256 other upstream 680464 1958240 ~ 1974894 (+) False XLOC_026987
TCONS_00053257 other upstream 681150 1967756 ~ 1974208 (+) True XLOC_026987
TCONS_00053255 other upstream 703862 1950849 ~ 1951496 (+) False XLOC_026987
TCONS_00053254 other upstream 713203 1937920 ~ 1942155 (+) False XLOC_026986
TCONS_00053290 other downstream 1710188 4376498 ~ 4387008 (+) True XLOC_027026
TCONS_00053293 other downstream 2024416 4690726 ~ 4690841 (+) True XLOC_027031
TCONS_00053296 other downstream 2167775 4834085 ~ 4888504 (+) False XLOC_027034
TCONS_00053314 other downstream 2588768 5255078 ~ 5273838 (+) True XLOC_027045
TCONS_00053330 other downstream 2736805 5403115 ~ 5416987 (+) False XLOC_027051

Expression Profile

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