RNA id: XM_021581986.2


Basic Information

Item Value
RNA id XM_021581986.2
length 4520
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC110503581
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 5874485 ~ 6033122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGCACAATGCAACACCTCCACACCAGCTCAATTGAACTAAATTCACGGTTTGACTTGAAGACCTGGAGGTGGATGAGATAGGTCTCTCTCTGCAAGCTACTTACTTGGTcagcaagtaggcctacaaggAGAGACGCGGAAAGTACTCGCGGGTGGGAATGAGAAGGAAAGACATCGGACTGGGCGTGCCGCTGCAATTCCGGAGCTGAGATTGCATCTCACCCCACCCGCTCGCTCACCTAGGGTGATCCACAGAATTGTTGTGTAAATTATTCACGGTCATTTGCCCAATAACCTCATTGAGACGGATATCAGGTGACAGCGATGTAATTCATTGATATAGGACATTCATTCGCTTGAAAGGTTGTTTTACTTTCACTGgatgtatttttttaaagtgttGGCTTTGTAGGAGGTTGTAGGAACCCAGCTATGGATTTTGGAGAAACGCTGGACACGCCTGCACCTTGTATTTTGGACAAAGTTCAAGGTTACTGCATAATTTTTCTCCAAAATACATGAGTGATTGTTTTTGAATAACGGTACAGTCCGTTTCAATTCACCGGAGTGTGTTTCTAACAATTGTATGCTTTCTTTGACATTTTGGGGAACGGACAACACAACGTTTCAAAGAACGTTGTGCCAGGAACCATTGGATAAATGTGATCAGCATGTTAGTCAAGGACATTTTGCAGTGCAACCGAGGTGCGAAGAGGCATTGCTACCCAGCACAGATGAAACCGAATCGATTGACTAAAACCCCCTTATAGTAGTAGCTTGATTTACTAAAACCCCCTTATAGTAGTAACTTTCCACTCTTATATCTTTGTTATTCCTATGCGTTTTCCAGTGTGTGTTTGCTATACCTGTGGCCGGTGGTGGTACCTGAAgcttgtctcctgtctgggtgtgCGTCTTTTCGCGCTTAGACATTTCCCTGCGCTGCCTGACTGGCGTTGCTATAGAGCAACCCTACGCCGTCTCTGTTTCACCCTGGGCAGCATCGGATCCATCCGTGTGGGGACAGAAGTGCAAAGTTGGACGCTAATCGCCAGACGCCGTGCGTTAGAGAGCGGGATCTTTCGACTttgagggacaggagagagggctCAAATAAAAAAGGCAGATTGGCAGGTGGCCCGAGCTGAGCCAATGACAGGCGGAGAGGAGTCTTAACGTCGGGCAGGCTTGAGTCCAGCCAAAGTAAAAGCTGTCAACATGAGTCCAGCCAAAGCTGTCAACATAGAACAGAGTGGAGGCTacccacatacacatacacgGATGAGAGCCCAGGCCGCCGGCTTGTGGACGACGCCAAGTGGCGGCTTCCCCTCCACGTCTATAAGGAGCCTAGCCATGGAGAGCCTGCTCCTGTTCCTGGCCCTCCTCGCTACACCCgtcgcctccatgctgtgccccaAGCGCTGCACCTGCCAGAACCTCATGCCCTCCTACACTGTCCTCTGCACCAAGACAGGCCTGCTCTTCGTGCCGCCGAACATTGACCGGCAGACGGCCGAGCTGCGCCTCATGGACAACTTCATCACCACCCTTCGTCACCGTGACTTCGCCAACATGAGCAGCCTCATCCACCTGACGCTGTCGCGCAACACCATTAGCCAGATCAAGCCGTACGCCTTCGCCGACCTTCAGGACCTGCACGCCCTGCACCTGGACGCCAACCGACTCACTATACTGGACGACACCCACTTCCAGGGCCTGGTCAACCTCAGGCACATGATCCTTGCCAACAACCAGCTGCACAGCATCTCAGAGGGGTCCTTCCAGGACTTCCTGGAGACCCTGGAAGACCTGGACCTGTCCTACAACAACCTGGTGAACATCCCCTGGGAGACCATCGGCCTGCTGGCTAGTGTCAACACCCTCAGTCTGGACCACAACCTCATAGAGATGGTCCCCGAAGGCATCTTCTCCAACCTGCACAAGCTGGCGCGTCTAGACATGACCTCCAACAAGCTGAAGAAGATCCCTCCAGATCCCCTGTTCCTGAGGATCCCAGTTTACGCTAAGCTGAAGGGTTCTCCACTCACGTCGCTGGTGCTGAGCTTTGGTGGGAACCCGCTGCACTGCAACTGTGAGCTAATGTGGCTGAGGCGGCTGACCAGGGAAGACGATCTGGAGACCTGCGCCTCTCCCCGAGAGCTCGCCGGCAAGTATTTCTGGACTATCCGCGAGGAGGAGTTTGTGTGCGAGCCGCCCATGATCACGCGGCACACCTCCAAGATGTTCGTGATGGAGGGTCAGGAGGTGAGCCTACGCTGTAAGTCAGTGGGTGACCCAGAACCTTCCACGCATTGGGTCAGCCCCGAGGGGAAGCTAATCGGGAACACGTCCCGCACCATCTGCTACGAGAACGGCTCTTTGGACATCCTCACCACCACTGTGAAGGACTCTGGGAAGTTCACCTGCATTGCCTCCAATGCCGCTGGCGAGGCCACAGCGCCCGTGGAGCTGGTGGTTAACCCCTCGCCACACTTTGACCCCAAGCTGGAGCCCGAGCCTGGCCCTTCGGACATCCCCACCTCCATCAAGTCCAATGCCAGCGGGGGCCACGCCCGCACCGACCATCAGAGGGTCAGCGTGTCGGAGCTGAGCTCGACTTCGGCCACCATCCGATGGCCCTCCCAGGACCACATCCCGGGGGTCCGCATGTACCAGATCCAGTACAACAGCTCCTCCGACGACATCCTCATATACAGgatgaTCCCTGCGTCTCATAAGTTCTTCCTACTCAGTGACCTGGCCTCTCAGCGGGACTATGACCTGTGCGTGCTGGCGGTGTACGACGACGGCGTCACAGCCCTAACCGGCACCCGCCTGGTGGGCTGCGTGGCTTTCACCACAGAGCGAGAGTACCGCCAGTGCCGCTCCCTCCACGACCAGTTCCTGGGCGGCACCATGATCATCGTGATCGGCGGTATCATCGTGGCCTCCGTGCTTGTCTTCATCTTCATCCTCCTCATGAAGTACAAGCTGCACAGCAACCACTACAAGCAGAAAGCGGCACATGTCAGCAACGTGTGCTCTCAGACCAACGGGGGCCAGGCTGCAGGCGGGGGAGGCGCTGCcatcccaccctcctcctcttcctcaggcTCGACCAATAGGCCCATGCCTTCTGGCCCAGTGGACAGGGTAGGGCACGACGGACCCCATCAGGCCTCGGAAGGGGGCTTCGGAGGGCCCTTGAAAGGGACCACGGTAGTGGACTTGAACCCAGAGTACGGGAAGTCAGTGAAGGACGAGGATGCTATATCACAATAACACAGGATCTGGGACTGCCCCAACACCACCCACTTTTTATTTCCTGGTGCTGGGGTCCCTCTGCCTTAACAAGGATTATCTCGTGTCCAAGATTTGCACATCACCCATGCTCGTCCtctgaggtggagggatggagaatggAAAGGTGAAGTCCCCCTGGTTCAAGGAAGTtggaaaaacacaaaataataaatATGAAGCCAAGAACAGCATTGGGAGCAGAGATGGGGTGGATGCCATGGAATCGCTGTGCTCTGTCACTTATGCAATTCTATCCGGAACTGGGATGTAATCCAGCCCTGTGGAGTGGAGGGAAATGTTTTCCAAAACCTGGGGCTTCTTTTACTGCGTGAGGAATGAATTGACCTTAGCCCAGACGCCTAACATTCCTTTCGGGAATACTTTTTGGGATTCCCATTGAAATTGCCTACTACAGAGGAACACCCTTGGATGGTTTTGATGATGTATTGTGGGTTTCGTAGTAAAGCTCCACTCTCCCTTAACGATCGGTCATTTGCCAAAGGAATACAATAAGAGGAAAAGGCAATACAGTGTTTTGTTCTCCTCCCCGAGGGCCTTGGAAGCGTTAGCACACAGCGATGTCGCGTCGATGCACCGATATCAAACGGTTGTTCTTTGATCTCTTAGGGCACTTTATAATCTTTATAATCctatcttgctctctttctctctttctctacacccccccccccccccatctctctctctctctctgtctatatggACAATTGAATAGTATATTCATCAATTAAGAGATCAGATACATCCATTTTGGATGATGGTGAAAACAAATCATATTATTTGGCCATGGATATCCCAACTTGGAATAAAAACATGGGCTCTCAAGATGAGGTCAAAATAAGAACCTGGATCTGGTTTGGTTTGATTACATGCACTTACAGCACAAGTATTGCGTTTTGGTTTGATGGTGAAATGGTGAGTTAAGTTTCATTCTGACAAAAGAAACCGACCCTATTGTATAACACTTTCGATATGGAAAAGATGGACACAATGATCAGATACAATTTTACCCTTACTGTTGACTGTGTATGTATTTGTATGTGAGATATACCTTCGATTTTCTCTGATTTGATACCCATATTTCCTTTGAATTATGAAACAACAATAAGAAAAAAATATGTGAGATGGAATTGTATGCTTTCATAGGTAAAATATGTGGATTTATAAAGAAATAAAATTATTTTTCTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2168584 lncRNA upstream 50640 5823638 ~ 5823845 (+) True G1895806
TU2168523 lncRNA upstream 92309 5781968 ~ 5782176 (+) True G1895749
TU2168437 lncRNA upstream 140623 5733632 ~ 5733862 (+) True G1895664
TU2168408 lncRNA upstream 158920 5715363 ~ 5715565 (+) True G1895635
TU2168397 lncRNA upstream 165237 5707646 ~ 5709248 (+) True G1895624
TU2168780 lncRNA downstream 23522 6056644 ~ 6057537 (+) True G1895996
TU2168787 lncRNA downstream 30625 6063747 ~ 6063982 (+) True G1896003
TU2169204 lncRNA downstream 324149 6357271 ~ 6357486 (+) True G1896397
TU2169171 lncRNA downstream 337017 6370139 ~ 6370333 (+) True G1896364
TU2169169 lncRNA downstream 338823 6371945 ~ 6372956 (+) False G1896363
NM_001160596.2 mRNA upstream 354322 5518991 ~ 5520163 (+) False bl1s3
XM_021581976.2 mRNA upstream 416134 5455761 ~ 5458351 (+) True zgc:162730
XR_005039423.1 mRNA upstream 426451 5431459 ~ 5448034 (+) True LOC118944106
XR_005039385.1 mRNA upstream 486686 5384458 ~ 5387799 (+) True LOC118944078
XM_036961804.1 mRNA upstream 1111654 4743633 ~ 4762831 (+) False tmprss4a
XM_021581987.2 mRNA downstream 40465 6073587 ~ 6076625 (+) True LOC110503583
XR_002470495.2 mRNA downstream 109281 6142403 ~ 6143853 (+) True LOC110503584
XR_005039337.1 mRNA downstream 123718 6156840 ~ 6169793 (+) True LOC118944026
XM_021581993.2 mRNA downstream 252596 6285718 ~ 6356497 (+) False LOC110503587
XM_021581994.2 mRNA downstream 252597 6285719 ~ 6356497 (+) True LOC110503587
TU2168015 other upstream 351620 5521415 ~ 5522865 (+) True G1895266
TU2168012 other upstream 354453 5519021 ~ 5520032 (+) True bl1s3
TU2166742 other upstream 1429509 4444623 ~ 4444976 (+) True G1894083
TU2166691 other upstream 1533081 4336603 ~ 4341404 (+) False LOC118944093
TU2166174 other upstream 1583887 4289908 ~ 4290598 (+) True G1893604
TU2169780 other downstream 907294 6940416 ~ 6941556 (+) True G1896894
TU2169820 other downstream 984673 7017795 ~ 7018558 (+) True G1896931
TU2170012 other downstream 1283830 7316952 ~ 7328311 (+) False LOC110503629
TU2170011 other downstream 1290157 7323279 ~ 7328311 (+) True LOC110503629
TU2170319 other downstream 2043084 8076206 ~ 8079986 (+) True LOC118944073

Expression Profile