RNA id: XM_021581996.2


Basic Information

Item Value
RNA id XM_021581996.2
length 4708
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC110503590
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6371958 ~ 6472758 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTcagacaccacagaagaagaaggtTCTGTTTCAGGAAGTTGTAACAGGAATAATTATGTGTCTAACGTTGTCGTTGGTTAAATAGTTTTTGTGATGATTAATTCAAACGTTAACTTTGTGGGCAATGCATGAACATTCACACAGCTTACAATATGGCTAATATAGCAAGGACCGGAGACATTATCCATTTAAacgttggaggaaaaagGTTCAGCACCTCCAGACAGACATTGACATGGGTCCCAGACTCCTTTTTCTCAAGTCTTCTAAGTGGGAGGATCTCAACCTTGAAGGATGAAACTGGAGCTATCTTCATAGATCGGGACCCATCTCTCTTTACTCCCATACTGAACTTCCTGCGTACCAAAGAGTTGTTTCCCAGGTCTATAAATGTGCACCTGCTCATGCATGAAGCGGAGTTCTATGGCATCACTCCGTTGGTGCGTAAGCTGCAGCTTTGTGACGAACTGGACCGATCTTCCTGTGGAAACGTGCTCTTCAATGGCTATCTGCCGCCTCCAGTGTACCCGGCAAAGCGGAGAAACCGCCACAGTGTGGCGGGACCTCAGTATATGGTGGGCTGTGCCTTGCCCATGGAGAGGGCTCCAGTGAGACGCAGCAACACCATGCCACCCAACCTGGGCAACGCGGGCATACTGGGTAAAGCAACGATTGAGGAGAGGATAAGTGGTGCTCAGCTTGCTGACCCAGGCATGGTCCGCATCATCTGTGGCCACCACAACTGGATCGCTGTGGCTTATGCCCAGTTTGTTGTTTGTTACCGAGTGAAGGAGTCTACGGGCTGGCAGCAAGTGTTCACCAGTCCCCGCCTGGACTGGGTGATTGACAGGGTGGCGCTCAACGCCAAGGTGATGGGCGGCTCCCTGGGAGACAACGACAAGATGGTGGCCGTGGCCTCGGGCACAGAGATCATCCTCTGGACTATCTGTCCCGACGGCAACGGCAACGAGATAGGTGTGTTCAGTCTGAATGTCCCCGTGGAGGCTCTCTTCTTCGTGGGGAACCAGCTTATTGCCACCAGCCACACAGGGAAAGTGGGAGTATGGAATGCAGTGACCAAACATTGGCAGAATCAAGATGTGGTTCCCATTAATAGCTATGACACTGCCGGATCGTTCCTCATTCTAGGCTGCAACAATGGGTCCATATATTATATAGATGTTCAGAAGTTTCCATTGAGGATGAAGGACAATGACCTCCTAGTCACAGAGTTGTACCGCGACCCCACGGAGGACGCCATCACTGCTCTCAGTGTCTACCTCACGCCCAAAACAATCCCCAATGTGTCGTCAGGCGACAGCGGCAACTGGATCGAGATCGCTTACGGGACCAGCTCGGGCACGGTGCGGGTCATAGTGCAGCACCCGGAGACCGTTGGCTCTGGGCCCCAGCTCTTCCAGACCTTCTCAGTCCACCGTAGCCCCGTCACCAAGATCATGCTCTCTGAGAAGCACCTCATATCAGTGTGTGCAGACAACAACCACGTGCGGACATGGACGGTGACTCGCTTCAGGGGCATGATCTCCACCCAGCCAGGCTCCACCCCCCTCACCTCCTTCAAGATCCTCTCTCTGGAGGACATCGACGGCCACGGGGGCTGTGCTGCCGGCACTGAGATAGGTCCGTATGGCGAGCGAGACGACCAGCAGGTGTTTATCCAGAGGGTCGTCCCCGACACAGACAAACTCTACGTGCGCCTCTCGTCCAACGGGAAGAGGGTGTGCGAGGTGCGCTCTGTGGACGGcacctccatcacctccttcATGGTGCACGAGTGCGAGGGGTCCAGCCGCATCGGCTCACGTCCCCGCCGCTACCTCTTCGGTGGCCACGCCAACGGTAGCATCCAGATGTGGGACCTGACCACCGCCATGGAGATCGCAGGGAAAGTGGACATCAGGGCGCTGGGAGGCCCAACAGAGGAGGAGCTCCTGGAGCTGCTGGACCAGTGTGACCTGGCTCTGACCCGTACGCCCGACATGAGTCCCGCTGCCTCCTTCACCCACTCCTCCACACCCCGAGCCTCCACCTCCAGTTTGCAGTCCCAGCTGAGTGAGAGCTCCAGAGAGCGTGGGACCAGAGGAGGTGTGAGCAGCTCGGGTCCCTTCTCTGGTAGCCTGCCCCGCCAGGCCCCTCCGGTGCCCCTCACCAAGCCCCGGGACATGGCTCTCTCCATGGCGGGGTTGGGCATCCAGCCCCACCACCTGGGTCTGAGCCAGGCCTCCCTCAGCAGCAGTGGCAGCCCCCGGCCCGGCCGCACCGTCCCCCAGGACAGAGACCGGGACGGTGGCATGGGGTCTCTGCGCAGGGGTAGTTTTGTTGAGCGTTGTCAGGAGCTTGCCAAGGTCTCGGACTCTGCAGGAGGGGCGGAGGGGGGCACGCGGCGCAGCCTGGCTGTATGCTCGGAGTTGGAGGCTAGACTGGGTCTACGGACCCCCGCCTCTTTCTCCAGCCCCCCTGCAGCCTCCCCAACTTCATCGCCGCGCCGGCCGCAGCCCACCTCACCCAGCCCTGCCCCTGCTACAATCGTCAGTCCAACCCGCTCCCAGACCCCCGTGTCGCCTCGTCGAGCTGACACCTCCCCTACTACAGAAGTCCCGCCCCCTGAGGCTGCAGCAGCCACTCCAGAGAGCTCCTCCCCTGTGCCCCCCACCAGTTCTAAACCCCCTATGAATGAGACCAGCTTCTGACTGGCTCGGTGATGTATGAGTGAGTGGACAAACAATGGACGCTTTTGGTGTTTCTGAGCATGTGTGGTTTAGTGACGGCACCTATTGTCGCATTTATGGACATTTTCTTTTTTAGCATCAAGGACACATCAAATGTCATTCTTCTGTTTTCAAAAGATGAATATACAACATATATCCAAACTGTCAATGTGTTGATGATACACATTGTAAATCTAGCCATGTATACAGTTGTTCGGTTGCATTTGGTAGAGCAGTCCATTTAAttaaattacactgaacaaaaatataaatgcaacaatttcaaagattttactgcgttacagttcatataaggaaatcaagtcaatttaaataaaatcattaggccctaatctatgtatttcacatagctgggaatacagatatgcatctgtttgtcacagataccttaaacatTTTTGTAGTGTGGTCAGAAAACCAgtgagtatctggtgtgaccaccatttgccttatgcagcacaacacatctcctttgcaaagagttgatcaggctgttgattgtggcctgtggaatgttgtcccactccgcttCAATAGCTGTGCGAAGTCGCTGGATATTGgtaggaactggaacatgctgttaaACAAAATCGAATCCAGAGCATCCGaaacatgctcaatgagtgacatgtctgagaatgcaagccatggaagaactgggacattttgtGTACAGGTCCTCGCAACATGGGTcagtgtattatcatgctgaaacatgaggtgatggcggcagatgaatggcacgacaatgggcctcaggatctcgtcacggtatctctgtgcatccgtggaggctggtgggctcatagtaatggctggaatggaataaatggaactgtgtatttaacaaatcaaatatatggaaaccacatgtttgactccgttccattccagccattacaatgcgTCCGTCCTCCTGTAGctactcccaccagcctccattgCCGTGCACTCAAATTGGCATCGATAAAATGCTCTtttgtttgttgtccgtagcttatacctgcccataccgtaaccccaccgccaccatggggcactctgttcacaacgttgacatcagcaagccTCTTGCCTACACAATACCgggattaatctgtgaagagcacacttctccagtgtggcCATCGAAAGTGAgcatttgagattttttttaggatgagcacgcagatgagcttccctgagacagtttccgATAGTTTCTGCAGAAATTGTATTATTCGGTTGTGCAaaaccacagtttcatcagctgtccaggttggCTGGCCTCTAAACGTTTCTGATATCCTCTATAGATTTCTCTTTCAGTCTTCCTGCTTTGCGCTACGGTTGGCTTTCTGTACCTTGAATGAATCAATAAGCCTACTGCACACGCAGTATCAAATGTAGTGATGATTGTTGACGAAGAATCCGATGGCAAATCTATAGATAAATGATAGACATTTTATCATTCATATGTTTAGTTACATCTGACTAACTTACTGCCATTTTGGATCATTCTTTTTCAAGTCTTCGTCCAGATCACAACCCAGTGCCTCACGTACCTgtgttttatctttttttttttttttttatgggttATGACCATTTTACCCAAACTTCGTTACAAGGACAAGCAACTTGATTGTGGAGTGATTCTACCAAATGTCGGTAGAGGTCTATCTCTTTGCTTTTTCTGAACACATGTTTGTGTATTTAGTGGTTTCTGTCGCAATGTTAACCGGTTTGATTGATTTGTCACTGACAACAACGTAGTTCAGCGGTATTTCCTGTTGCACCAATAGCTCAGATGAAGAGGCGTGTTCAAGTGTCTCTGTTTACTGTCTTGTCTAATACTTGTCacacttcttttttttcttttttgtctTTCACTTTGGTAGCATTTGTTTTTCCTCTGCAATTCCATGATGTGCCACATAAATGAAGCAGAAAGTCATACTATTAATCAAACTCTta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2169484 lncRNA downstream 7968 6361697 ~ 6364102 (-) True G1896637
TU2169345 lncRNA downstream 54548 6264040 ~ 6317522 (-) False LOC118944097
TU2169342 lncRNA downstream 94407 6267302 ~ 6277663 (-) True LOC118944097
TU2169338 lncRNA downstream 173707 6181377 ~ 6198363 (-) False LOC118944082
TU2169440 lncRNA upstream 74406 6457860 ~ 6472758 (-) False LOC110503590
TU2169535 lncRNA upstream 93916 6477370 ~ 6478792 (-) True LOC110503594
TU2169538 lncRNA upstream 101361 6484815 ~ 6485091 (-) True G1896673
TU2169541 lncRNA upstream 103333 6486787 ~ 6487037 (-) True G1896676
TU2169542 lncRNA upstream 103587 6487041 ~ 6487305 (-) True G1896677
XR_005039405.1 mRNA downstream 91920 6268918 ~ 6280150 (-) False LOC118944097
XR_005039386.1 mRNA downstream 173703 6182410 ~ 6198367 (-) False LOC118944082
XM_021581988.2 mRNA downstream 196982 6159711 ~ 6175088 (-) True LOC110503585
XM_021581990.2 mRNA downstream 214409 6148189 ~ 6157661 (-) True LOC110503586
XM_021581991.2 mRNA downstream 214410 6148189 ~ 6157660 (-) False LOC110503586
XM_036961363.1 mRNA upstream 1831 6385285 ~ 6456519 (-) False LOC110503306
XM_036961361.1 mRNA upstream 1831 6385285 ~ 6456521 (-) False LOC110503306
XM_036961362.1 mRNA upstream 1831 6385285 ~ 6456521 (-) False LOC110503306
XM_036961358.1 mRNA upstream 1831 6385285 ~ 6456522 (-) False LOC110503306
XM_036961359.1 mRNA upstream 1831 6385285 ~ 6456522 (-) False LOC110503306
TU2169340 other downstream 140262 6182412 ~ 6231808 (-) True LOC118944082
TU2169333 other downstream 173707 6182412 ~ 6198363 (-) False LOC118944082
TU2168814 other downstream 502852 5868896 ~ 5869218 (-) True G1896030
TU2167323 other downstream 2018134 4353578 ~ 4353936 (-) True G1894611
TU2166628 other downstream 2077592 4291849 ~ 4294478 (-) True si:dkey-202l22.3
TU2169441 other upstream 75067 6458521 ~ 6460065 (-) True LOC110503590
TU2173065 other upstream 1663325 8046779 ~ 8047974 (-) True G1899875
TU2174075 other upstream 3187417 9570871 ~ 9574149 (-) True LOC110503680
TU2174329 other upstream 3621918 10005372 ~ 10008340 (-) False G1901072
TU2174330 other upstream 3621918 10005372 ~ 10012354 (-) True G1901072

Expression Profile