RNA id: TU2169437



Basic Information


Item Value
RNA id TU2169437
length 903
lncRNA type read_through
GC content 0.48
exon number 2
gene id LOC110503590
representative False

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6371958 ~ 6472758 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTATAAGAGCCTGGTGTTAAACTGTGCCGTCCTCGTCCATCAGAGTGAAGGAGTCTACGGGCTGGCAGCAAGTGTTCACCAGTCCCCGCCTGGACTGGGTGATTGACAGGGTGGCGCTCAACGCCAAGGTGATGGGCGGCTCCCTGGGAGACAACGACAAGATGGTGGCCGTGGCCTCGGGCACAGAGATCATCCTCTGGACTATCTGTCCCGACGGCAACGGCAACGAGATAGGTCAGTCCGCAAACGGATGAACGCACAGTGTTAAAGCAAACGTTACGGGTATAGTTTTTATCGCTCAAAATGTTTATTTGTTGACTTGTCGTTTTAGTACTTTAAGAGACCACGTCATAGGTAGTTGTGGGGGCTTATTGTAAGGGCCGTGCTAATAGGTCTCCGTTGTACCTGCTTCCCTCCAGGTGTGTTCAGTCTGAATGTCCCCGTGGAGGCTCTCTTCTTCGTGGGGAACCAGCTTATTGCCACCAGCCACACAGGGAAAGTGGGAGTATGGAATGCAGTGACCAAACATTGGCAGGTAAAGTTGTGTCCGTACGTTCTGTAAGAATGCCACGTCAAAAGAGCATATTATGTATATTAATAGTATATGTGGTCTTGTATGGCTCAGTTGCCAacgccaggattgtgggttcgattcccggggccacccatatgtaaaatgtatgcacacaggACTGTAAGTTGTGTtggctaaatggcatatattatatgtATTGTACACCATTTCATGTTTTCCTTTTGTCTTTCCCTTCTCAGAATCAAGATGTGGTTCCCATTAATAGCTATGACACTGCCGGATCGTTCCTCATTCTAGGCTGCAACAATGGGTCCATATATTATATAGGTAAGGGAAGTCATCTTTTCTACCTATGACGCAATAATGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2169433 lncRNA downstream 3486 6371958 ~ 6374095 (-) False LOC110503590
TU2169484 lncRNA downstream 13479 6361697 ~ 6364102 (-) True G1896637
TU2169345 lncRNA downstream 60059 6264040 ~ 6317522 (-) False LOC118944097
TU2169342 lncRNA downstream 99918 6267302 ~ 6277663 (-) True LOC118944097
TU2169338 lncRNA downstream 179218 6181377 ~ 6198363 (-) False LOC118944082
TU2169535 lncRNA upstream 4612 6477370 ~ 6478792 (-) True LOC110503594
TU2169538 lncRNA upstream 12057 6484815 ~ 6485091 (-) True G1896673
TU2169541 lncRNA upstream 14029 6486787 ~ 6487037 (-) True G1896676
TU2169542 lncRNA upstream 14283 6487041 ~ 6487305 (-) True G1896677
TU2169543 lncRNA upstream 16548 6489306 ~ 6489561 (-) True G1896678
XR_005039405.1 mRNA downstream 97431 6268918 ~ 6280150 (-) False LOC118944097
XR_005039386.1 mRNA downstream 179214 6182410 ~ 6198367 (-) False LOC118944082
XM_021581988.2 mRNA downstream 202493 6159711 ~ 6175088 (-) True LOC110503585
XM_021581990.2 mRNA downstream 219920 6148189 ~ 6157661 (-) True LOC110503586
XM_021581991.2 mRNA downstream 219921 6148189 ~ 6157660 (-) False LOC110503586
XM_021582002.2 mRNA upstream 4441 6477199 ~ 6484541 (-) False LOC110503594
XM_021582007.2 mRNA upstream 17894 6490652 ~ 6511021 (-) False LOC110503595
XM_036962046.1 mRNA upstream 27766 6500524 ~ 6511021 (-) True LOC110503595
XM_036961552.1 mRNA upstream 65040 6537798 ~ 6544692 (-) False LOC110503597
XM_021582009.2 mRNA upstream 65040 6537798 ~ 6544807 (-) False LOC110503597
TU2169340 other downstream 145773 6182412 ~ 6231808 (-) True LOC118944082
TU2169333 other downstream 179218 6182412 ~ 6198363 (-) False LOC118944082
TU2168814 other downstream 508363 5868896 ~ 5869218 (-) True G1896030
TU2167323 other downstream 2023645 4353578 ~ 4353936 (-) True G1894611
TU2166628 other downstream 2083103 4291849 ~ 4294478 (-) True si:dkey-202l22.3
TU2173065 other upstream 1574021 8046779 ~ 8047974 (-) True G1899875
TU2174075 other upstream 3098113 9570871 ~ 9574149 (-) True LOC110503680
TU2174329 other upstream 3532614 10005372 ~ 10008340 (-) False G1901072
TU2174330 other upstream 3532614 10005372 ~ 10012354 (-) True G1901072
TU2174494 other upstream 3732462 10205220 ~ 10205948 (-) True G1901206

Expression Profile