RNA id: TU2169441


Basic Information

Item Value
RNA id TU2169441
length 1513
RNA type TUCP
GC content 0.41
exon number 2
gene id LOC110503590
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6371958 ~ 6472758 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACGGTGAATAAACTGTAAACTATTTtagtttaaataaaaaattgaGTGTGTGactctttatttattttaatatcaGTTGAATAACACTAATCCATCCAGTacatacccactgggcacacactttGAATCAACGTTTTTCCCACATAATTTCAataaaattacattgaaccaatgtggaatagatgttgaattgacatcttTGCCCAGTGGGTTAGAGTGTGAGGAAGGATGATATACCTATTATGTCATTACTGGAATCACTTACAGTATGCGTCTATGGTAGTACAATATTACATTTCTCATGATTCAGGAAATGAGGAAGGGCGATGACTAACCGTCGATGTGAGGGGGCATGACAGCCACAAAATCCAGCCCTGACTCCTTCAGCACCATGTACATCCTATCATGGTCCTCCGTTACCGGCAGGAGCCTGGGTGGCACTTTAGACCGGTCCCATAGGAGGAAGGCTGTGAAGCAGAGAGGGGGACGATATAAGGATATGGTTTCTTTATGGTGGTTTATTGGAAGTTGGAAAGATTCTGTAACCCTGACTGTCCAAGATGTACCCGACATGCAGCCAACTACTTTGCGGATCCCCCCAGCCTTCATGGCGTCTAGGATGTTTCTGGTTCCTTCTGACATCATTGTTGTGGGACCTGTGGATTACAATTTAAACATGAACATACCGACCAATATCCTGGCCTAAGCAACCCCTAGTGCAGTTAGTTACTGCACTCTCACCCTGAATATTattacaaaacatattttacctcAGAGcagaaaacatgttttaatgagACTCCTGAACACTTCCATTTTGTTTTTCACTTGATTTCAACTTgtacaactgaatgccttcaactgaaatgtgtcttccgcatttaacccaacccctataACATATCTGTTATAACTTGTTTTTATTCACACAACTGCACATATGTTTTCACTAACTTAACATTCCTATAACTTATTAATGAAAGATTGCCTAAACTTACTGAGGTCAGTCCTGGTGCCTAGAACGATGATAACAGCATCCTGACCCTGTATAGTCTTTTTCACATCTTCCTTATTGAGGACATCTCCTACCACCACCCTGCAGGCTTTGTGTTCTGCAGGCAGCCTGGCAGGGTCCCTCACCAGCACTGTCACATTGTAACCTGTGGACAATGATGAACAAAGAAGCATTGTGAATTTATTGAGTCATCTTATCATTTATCAATGATCCATTGGTATTTCAGTCTGATTGGAATATGAAGATGAGTGGAATATGTAATTGGTTCATTTTTGACGAATCGATCTCAATTCTAGAGCACGGCCATGGATCGAATTGATGAGGCCATCCCAGTGTTATGGATAAGCACGATAAGCAAGACAGTGGACTTTATCACGTATCTGCCACGCACTCCAATGCACTCATAGCAATCACGAGTCAGCAGAACACTATAACGACTTGCATGACTCGACACTTTTGTCTCGTGATCTCAGAGCAAGGAAAGGAAAACGCTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2169433 lncRNA downstream 84426 6371958 ~ 6374095 (-) False LOC110503590
TU2169484 lncRNA downstream 94419 6361697 ~ 6364102 (-) True G1896637
TU2169345 lncRNA downstream 140999 6264040 ~ 6317522 (-) False LOC118944097
TU2169342 lncRNA downstream 180858 6267302 ~ 6277663 (-) True LOC118944097
TU2169338 lncRNA downstream 260158 6181377 ~ 6198363 (-) False LOC118944082
TU2169535 lncRNA upstream 17305 6477370 ~ 6478792 (-) True LOC110503594
TU2169538 lncRNA upstream 24750 6484815 ~ 6485091 (-) True G1896673
TU2169541 lncRNA upstream 26722 6486787 ~ 6487037 (-) True G1896676
TU2169542 lncRNA upstream 26976 6487041 ~ 6487305 (-) True G1896677
TU2169543 lncRNA upstream 29241 6489306 ~ 6489561 (-) True G1896678
XR_005039326.1 mRNA downstream 1989 6389448 ~ 6456532 (-) True LOC110503306
XM_036961357.1 mRNA downstream 1998 6385285 ~ 6456523 (-) False LOC110503306
XM_036961358.1 mRNA downstream 1999 6385285 ~ 6456522 (-) False LOC110503306
XM_036961359.1 mRNA downstream 1999 6385285 ~ 6456522 (-) False LOC110503306
XM_036961360.1 mRNA downstream 1999 6385285 ~ 6456522 (-) False LOC110503306
XM_021582001.2 mRNA upstream 7540 6467605 ~ 6475962 (-) True LOC110503593
XM_021582002.2 mRNA upstream 17134 6477199 ~ 6484541 (-) False LOC110503594
XM_021582007.2 mRNA upstream 30587 6490652 ~ 6511021 (-) False LOC110503595
XM_036962046.1 mRNA upstream 40459 6500524 ~ 6511021 (-) True LOC110503595
XM_036961552.1 mRNA upstream 77733 6537798 ~ 6544692 (-) False LOC110503597
TU2169340 other downstream 226713 6182412 ~ 6231808 (-) True LOC118944082
TU2169333 other downstream 260158 6182412 ~ 6198363 (-) False LOC118944082
TU2168814 other downstream 589303 5868896 ~ 5869218 (-) True G1896030
TU2167323 other downstream 2104585 4353578 ~ 4353936 (-) True G1894611
TU2166628 other downstream 2164043 4291849 ~ 4294478 (-) True si:dkey-202l22.3
TU2173065 other upstream 1586714 8046779 ~ 8047974 (-) True G1899875
TU2174075 other upstream 3110806 9570871 ~ 9574149 (-) True LOC110503680
TU2174329 other upstream 3545307 10005372 ~ 10008340 (-) False G1901072
TU2174330 other upstream 3545307 10005372 ~ 10012354 (-) True G1901072
TU2174494 other upstream 3745155 10205220 ~ 10205948 (-) True G1901206

Expression Profile