RNA id: XM_021582001.2


Basic Information

Item Value
RNA id XM_021582001.2
length 2642
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110503593
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6467605 ~ 6475962 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTTTTGGCCCGCCCCAGATGGTCTTCACTTTAGTGTTCACAGATCTTAGACTGACTGGATAATTTAGTCTATAGTTTCACCTAGGGATTGTTTGAGCCTTTCCCCTATATTTTCCTTATCCAGTCTTGTAAACACCAAAGAGAAAAGGGTAATGAAGGGGGCAGAAAAGGAAATGTGTTGTAGCTCACCTAACTGTTTCTGGTTCAGCTCTTGGACTATTTTCTGGGGCTTATTCAGGTGATTGAAACATCCACATGATTGCAGATAGAAATAGAACGTAAAAGACTACGAACATGCTGTTATCATGAGGAACAGTAGGGAGCAGTGTATTCTCAACATGTTTATTTGCAGAGTTCTAGGCGTTTGAACACATCCTTGTCAAAATTGTAACAGTGGGTTGGAGGACTGCCGACACTTTAAACTTGAGCAGACCGAGGCAGGGAAGTAGGCTACAAAGTCACAGTTTGGCGGATGACATTGAAAGCAGAAATCCAGAGGAAATGTCTTCGTGGTACAAATCTTGGATACTGCTTACAGGTTTTATATTGTTCTATGTTGCTTATCTGTTGTTTGGAGCGTTCGTTTTCTCCACCATCGAACGGCCTGTGGAGGACAAACTTAAAAGAGACATACAAGTCCTGAAAGAAGAGTTTCTCAACCAAAGTTGCGTCAATGCAACATCACTTGAAAACTTTTTGGAGAGAGTTTTACAAGCCAATAAGTATGGGATTTCTATCCTTCCGAATTCTTCTGCGAGTTCTAATTGGGACTTGGCTTCTTCTTTGTTCTTCGCCAACACTTTAGTAACGACAGTCGGATATGGGCACACTACACCCCTGTCGGACACAGGCAAAGCCTTCTCCATCTTCTATGCCCTGCTGGGAGTGCCCTTCACCATGCTGGTGCTCACCGCCTGCGTCCAGAGGCTCATGCACCTGGTGACCTACGGACCCATCAGCATGTGCCGCCAGAAGATCGGCCTGGAACCTCTCGCCGCCACTGCCGTCCACTTCGCCATCCTGCTGCTGGTGGTGGTGCTGGGCTTCTTTGTGGTACCCGCCGTGGTGTTCAGCTACATCGAGGACACCTGGTCCTTCCTGGACTCCATATACTTCTGCTTCATCACGCTGTGTACCATCGGCCTGGGCGACTACGTGCCCGGCGAGAATCCCGGACAGAATTTCAGGTCGCTGTATAAGATCTCTGTGATGGTGTACCTGTTTGTCGGGCTGATGATGATGTACCTGATCCTGCGTGCCTTCCACCGGATGGCCGACCTGCATGGCCTGACTTCTTTCTTCCAGCTCCCCCACTGTGACGAGGATATAGAGGAGGACAAGGAGCCCATCATCGAGGCCGGCCACGAGGACCAGCATGAGGCGGAGGACTCTGCCAAGCCCCTGGATCCGGCCTCCCAGACCTCCTATAACACCATCAACCGATAAGGACTCACTCCAATCTGGTCCGTTCTCCTTTACATCAGTCAGGTCAAACAGTTTAAACTACAGTCACTGTTTTACAGCAACACAGGGATGAGTTTAAAACCTGACACTATATAGGCACCAAAGACTATCTTTACCACTGTGAGGCAACTCATGGGTCAGGTCAGACCTTCCTGCTATGACAGCGCAACTAAACCAAAGAGAAACAAAAACTCTACAGCTGCACCAGTGCACCCAGTTGACACTTGGCGAGGGTTGTTCGTCAAGGAGGGAAAAGGTTGTTATTCCATAACCTACAGAGAACACTTCTGGTTGGGACTGATTCTGATTATTTATCACTTTTTTTTGGTTTCAGACCAAAAAATATTTAAGTATCATATACTGATATTTTCATGTACCCTTTTGTGGTTTTTAGGTCAGGGTTGATCAAGGAAGGTCATACAGAAATATCTGATATTTCAAAACTAAACAAACTCCTTATAGCGGCCATCTTTTGAAGGAGTTTGTTGCCCCTCCCTAGTAACTATGTGAAAAAGCCATTGCTTGAGACTTTGTCTTGAGTCATATGATGGATAACATTCCTAGGACTAGCGTGGGCTTTTCCCGGCTTTGTTTTTGCCTGTGGTGTGACATGGTCatgtgtttaaaaaataataagaaGAAAAAAAGACAAGGATATCATCTGAAGGATAACAAATTTAGGGAACAAAAGGATTGAAAATAAAAACCAAGTATATGTGTTCTGATGTGCAGTTGTCATTTGTTCAACGTTAGGAAGTGTCATTGTGAAAGCTATGTGACAGATTGTTCAGGATTAGCATGTAGGAAGTTTGTCAATGTACGTAGTGGCAAATGACAATGTAATATCTGCCAATAATGTAATGGCTGCTAATGTAATAACTTTTGCATTTGTTATAAATGCTGATAATGTAATAAATTGCTAAATGTTTGTGCATAATGTAATAATTATTACATTGTGTTGATTATTACAAAATTAAGTGGGTcactttttttaaatgaatgtaaTAATTTTAAACAATGTAATAACACAATGTAATAACTAAATTCACTCTTGTCTCATGTATATCAAGTGTCATGCTTCAGTAATAGTGGACAACACACCACATTCCTGAATCCTTATTTGATATTACTAAGGGAACGTAATTGTCCAGTTCATTAAACCAGTGGACTAATGTTG

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
K04917 KCNK6, K2P6.1; potassium channel subfamily K member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2169433 lncRNA downstream 93510 6371958 ~ 6374095 (-) False LOC110503590
TU2169484 lncRNA downstream 103503 6361697 ~ 6364102 (-) True G1896637
TU2169345 lncRNA downstream 150083 6264040 ~ 6317522 (-) False LOC118944097
TU2169342 lncRNA downstream 189942 6267302 ~ 6277663 (-) True LOC118944097
TU2169339 lncRNA downstream 269242 6182412 ~ 6198363 (-) False LOC118944082
TU2169535 lncRNA upstream 1408 6477370 ~ 6478792 (-) True LOC110503594
TU2169538 lncRNA upstream 8853 6484815 ~ 6485091 (-) True G1896673
TU2169541 lncRNA upstream 10825 6486787 ~ 6487037 (-) True G1896676
TU2169542 lncRNA upstream 11079 6487041 ~ 6487305 (-) True G1896677
TU2169543 lncRNA upstream 13344 6489306 ~ 6489561 (-) True G1896678
XR_005039326.1 mRNA downstream 11073 6389448 ~ 6456532 (-) True LOC110503306
XM_036961357.1 mRNA downstream 11082 6385285 ~ 6456523 (-) False LOC110503306
XM_036961358.1 mRNA downstream 11083 6385285 ~ 6456522 (-) False LOC110503306
XM_036961359.1 mRNA downstream 11083 6385285 ~ 6456522 (-) False LOC110503306
XM_036961360.1 mRNA downstream 11083 6385285 ~ 6456522 (-) False LOC110503306
XM_021582002.2 mRNA upstream 1237 6477199 ~ 6484541 (-) False LOC110503594
XM_021582007.2 mRNA upstream 14690 6490652 ~ 6511021 (-) False LOC110503595
XM_036962046.1 mRNA upstream 24562 6500524 ~ 6511021 (-) True LOC110503595
XM_036961552.1 mRNA upstream 61836 6537798 ~ 6544692 (-) False LOC110503597
XM_021582009.2 mRNA upstream 61836 6537798 ~ 6544807 (-) False LOC110503597
TU2169441 other downstream 7540 6458521 ~ 6460065 (-) True LOC110503590
TU2169340 other downstream 235797 6182412 ~ 6231808 (-) True LOC118944082
TU2169333 other downstream 269242 6182412 ~ 6198363 (-) False LOC118944082
TU2168814 other downstream 598387 5868896 ~ 5869218 (-) True G1896030
TU2167323 other downstream 2113669 4353578 ~ 4353936 (-) True G1894611
TU2173065 other upstream 1570817 8046779 ~ 8047974 (-) True G1899875
TU2174075 other upstream 3094909 9570871 ~ 9574149 (-) True LOC110503680
TU2174329 other upstream 3529410 10005372 ~ 10008340 (-) False G1901072
TU2174330 other upstream 3529410 10005372 ~ 10012354 (-) True G1901072
TU2174494 other upstream 3729258 10205220 ~ 10205948 (-) True G1901206

Expression Profile