RNA id: XM_021582010.2


Basic Information

Item Value
RNA id XM_021582010.2
length 2985
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110503597
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6537798 ~ 6544812 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGTTTTCGGGGGCAGTGGAAAAAGAGCCTGTGACGCGACATCCGCTTTTGGCGTTAACAAGGCGACAGACTATTTTAACCACTCCGCCACATTTACCGGATTGGCTGAACCGGGCCGAAGATAACATACCCGGTAGTTTTGTTCTTGTCAATATCAGTATGTAGGGGAACTAGTTTCAGACTGCGATGCCTCACATATGACGTTGGGTTGGATTTTCATTGGTTGTTTAGACTTGTTCACATGACCACAAGCTCGAGACGATGTAGCCTATTTGGAACTGTTTTGCTCTGGTCGTTTCTCATTCTGGCATTGCATTTTGTTTATCCACATGTAACCGGTAAATAACATTAACGATACTTTACTCCATGAAAGATTTCACACGGACTGGCCACATGATTTCAGAGCCTTTTCTGAGCTACATTTTCTGATCAGAATCCTGAAGAACTTTGTCCAAAGAGAATACTCTGTAACAATGATTTCTGATATTCCATACGAGAAGATGTGTGATGTGGAGTCCAGGAGAGAAGAGTCCTGCAGGAAAGGACCGATGTATTATAGGTGTCTGCTGGGTCTCACTGGAGTGGCCACTCTGCTATTGGCTGCCCTGTTCCTCCAGACCCTGCTGCTTCCCGTGGTTAACTCCTCCCCAAACAAGCCCGGCTTCAAGCTCCCACTTCCTCTCGCTGACACCTGCACCGACCCCTGCAAAATCGTTCTGTTGGAGAGCATCCCAGAGGGGTTAGAGTTCAACTCTAGTGTCACCAACCCATCCATCTACCAGGCTTGGCTCAACCTGATTAGTGAGGCTCGCAGTAGCGTGGACATTGCGTCTTTTTATTGGACGCTCACCAACAAAGATACAGGCACTCACGAGCCAACAGCGAATCAGGGTGAGGATGTCCTGAATAGGCTAGTTCAGGTGTCTCGGAAGCTCTCTGTCCGCATCGCTGTAAATACACCAACAGAGTCCCAACCTCAGGAAGACATAAATCTCTTAAAAAGTTCTGGTGCTGATGTAAGAGCCGTGAACATGCGGGATTTGACCACTGGAGTACTTCACACAAAGTTCTGGGTAGTAGACAACAAGCACATTTATATTGGCAGTGCCAACATGGACTGGAGGTCCCTTACCCAGGTGAAGGAGCTGGGGGCTGTggtgtacaactgcagctgcttgGCTGCAGACCTGGAGAAGATCTTCGAGGCCTACTGGTACCTTGGGCAAAAAGACACACCCATCCCTTCTCCTTGGCCCAGCAGTTTCAACACTCCTTACAATAAGGACACGCCCCTGCAGCTGCCACTCAACGGCACAGCCTCCAGCGTGTATCTGTCGAGCTCTCCACCATCTTTCTGTGCTGCCGGGAGAACCAGAGACCTGCAGTCTATTCTCAGTGTGATGGAGGACGCACGGGAGTTTGTCTACATCGCTGTCATGAACTACTTGCCCACCATGGAGTTTACACAACCCAAACGTTACTGGGCAGAAATTGACACTCAGATCAGACGTGTGGCATACGAGAAGCGGGTGAAGGTGCGCCTGCTCATCAGCTGTTGGGCGAGCACTTCGCCTGTCATGATCCCCTTCCTGAAAGCCTTGGATTCAATGCAGGAACCCAAGGCCAAGCTGGATGTCCAGGTGAAACTCTTTATTGTGCCAGCCAATCCAAAGCAGAAAGAAATCCCCTTTGCCAGAGTCAACCACAACAAGTACATGGTGACAGACAGGGTTGCCTACATAGGTACCTCTAACTGGTCTGGAGACTATTTTGTGAACACTGCTGGATCGGCTTTGGTGGTGAACCAAACGGCTGCGCAGTCAGTGGAGCCTACGGTCCAGGCACAACTACAGGCCGTGTTCGAAAGGGACTGGGACTCCGCCTACAGCACCCCAATCCACCAGCACGCCGACCTCAAAATGGTGTGTTAGATACAATACTACactctagaccagtggttcccaactcctcGAGTACCCCCAATAGCACACGTTTTTGTTGTATCCCCGTCAAAAAAAACaactgattcaactcattgagggcctgatgattagttgacaagttgaatcaggtgtgcttgtctggggctacaataaaaatgtgtactgttggaggtacttgaggactggagttgggaaccgcCGCTCTAGACTGTTGCAGGGCCTGTGTCCTCCAAGCCAGCATGGGGAGGAATTGGATGTAAGCAGGCCAATATAGCATGTCGAAACTGGATTCGAAGCccaatttgttttttttgttgttgccaagTATGCACAtttcttctctctgtccctgtacaCTAGTTCTAATCAGCAGCAGTTTCTGGGACGATTTCTTAAATTGCAGcactattttttatttgtatataaTTGCAGGAGTAGCAGTAGATATGTACTGTACCAGAAGATGGGTAAAACTATGCTGCCCTCTGCAGCGTCAGTGTGTCTTATCACCTCAACGATCAAAACACAAGCCTGTGTGTTTTTAATGAACTTTGGGTAACTCTTTGGGAATACATCCCAGTGAATCTCAGGGAAATTGCTATGTTATGTGTTGAATGTTTGGACTGATGTTTCTAGGCATGCTGGTTTGATcctttttattatattttatgtATGATTGGTGTGTTGTGCCTTGTTTTTCTATGTAGCCTAGactagtttaaaaatatatatatattcaatcatTCTGAATCCTTCTTCCTTTCAAACTAGTAGGTTTGCCATAGAATTGTGCAGTAACTGATTTCATATGTGTGCATTAAAGTCCAGAAAACGTATTTTTCTGGAATTTGCACTGCGTGGAGAGTGTCTTATGTGAGCAGTGCAGTGGAGAATGTTGTCAATGCAACTCAAAATAAGTGTTTAAAAGCACTGCACTGCGTATTATTTGGCAAGCACTAATATTGTACGATATTGATTGCATTTTGTACACACTACTTCCTTTTATGCGGCAATGTCCTAATAAATTGAATTTAGACAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2169559 lncRNA downstream 3145 6526730 ~ 6534653 (-) True G1896689
TU2169543 lncRNA downstream 48237 6489306 ~ 6489561 (-) True G1896678
TU2169542 lncRNA downstream 50493 6487041 ~ 6487305 (-) True G1896677
TU2169541 lncRNA downstream 50761 6486787 ~ 6487037 (-) True G1896676
TU2169538 lncRNA downstream 52707 6484815 ~ 6485091 (-) True G1896673
TU2172163 lncRNA upstream 1158 6545965 ~ 6546187 (-) True G1899070
TU2172168 lncRNA upstream 3891 6548698 ~ 6548987 (-) True G1899075
TU2172175 lncRNA upstream 7601 6552408 ~ 6552916 (-) True G1899080
TU2172177 lncRNA upstream 9552 6554359 ~ 6554673 (-) True G1899082
TU2172178 lncRNA upstream 10890 6555697 ~ 6555916 (-) True G1899083
XM_021582007.2 mRNA downstream 26777 6490652 ~ 6511021 (-) False LOC110503595
XM_036962046.1 mRNA downstream 26777 6500524 ~ 6511021 (-) True LOC110503595
XM_021582002.2 mRNA downstream 53257 6477199 ~ 6484541 (-) False LOC110503594
XM_021582001.2 mRNA downstream 61836 6467605 ~ 6475962 (-) True LOC110503593
XR_005039326.1 mRNA downstream 81266 6389448 ~ 6456532 (-) True LOC110503306
XM_021582011.2 mRNA upstream 39942 6584749 ~ 6589001 (-) True LOC110503598
XM_021582012.2 mRNA upstream 51890 6596697 ~ 6601829 (-) False LOC110503599
XM_021582014.2 mRNA upstream 51890 6596697 ~ 6601829 (-) False LOC110503599
XM_036961414.1 mRNA upstream 51890 6596697 ~ 6601829 (-) True LOC110503599
XM_036961330.1 mRNA upstream 78738 6623545 ~ 6686835 (-) False LOC110503601
TU2169441 other downstream 77733 6458521 ~ 6460065 (-) True LOC110503590
TU2169340 other downstream 305990 6182412 ~ 6231808 (-) True LOC118944082
TU2169333 other downstream 339435 6182412 ~ 6198363 (-) False LOC118944082
TU2168814 other downstream 668580 5868896 ~ 5869218 (-) True G1896030
TU2167323 other downstream 2183862 4353578 ~ 4353936 (-) True G1894611
TU2173065 other upstream 1501972 8046779 ~ 8047974 (-) True G1899875
TU2174075 other upstream 3026064 9570871 ~ 9574149 (-) True LOC110503680
TU2174329 other upstream 3460565 10005372 ~ 10008340 (-) False G1901072
TU2174330 other upstream 3460565 10005372 ~ 10012354 (-) True G1901072
TU2174494 other upstream 3660413 10205220 ~ 10205948 (-) True G1901206

Expression Profile