RNA id: XM_021582015.2


Basic Information

Item Value
RNA id XM_021582015.2
length 1582
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110503600
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6601980 ~ 6604021 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTTATTGTTTTCGTTCTGCGAGGGCCTTCGTGAGTACGTGCCTCGTGAATAGCATCAGTTGCGTCTAAAATGCGAATATAGACTGCACACAGACCAATGTTTACGAAAAGTTATCATATGGATATTAATAAACACTGTatgtaaaataatatatatttacaaaGGAACCGACATGCGCAACTCACGCAGCCCAGATCCTCGCGAACCGAGCTAGCTAGTGTATCCAGGTCAAAGGTTACTTTTTTTTAACAACACATGTTCTTGCACCCATGCGCATTTAGTTGGACTAAGTTACATTTCACATTTTAGCAGTACACAGAGgtcatgtcaaacgatgtatctTCGTCAAGTGATGAGGCAAGTGACACCGAGGAGGTTCCGCAAAAACGGAGGAAGCAGGCTTCAAGGTATCAGTGTCCAGCTGATTTTGTGGCATTTGCCCACAAACCCTGTGCCAGTACCCTCATCGAAAGGGTTTGTGAGGACAACACAGAATTATGGCTCATCAAAGCTCCCAGCAGTTTCAACCCGGACAGttTCAGCAGTCTGAAGATGCCTCTGTCTGGGCTGCAGACCATGCAGGCCCCTGCCCAGCAGTCGTGTAGTGGTGGGAACAACAGGCAGATCTACAGCGTGCTGGGTGGGCCCTCTGGTGCTGCGGACCTCCATCTCCTCACCAGTCACCCCCAGACGCTCGACTTGGTGGTCTGTGCCCCGGCCTTCAGCGGGCTCCTCAACATCTGTGAGAGCTACGGTGACTGCagcaccaaccagacccccattGCCATCCCAGCCACCCCAGCCCCCACTGTGCCCCCGGGGCTCCGCCAGCGCTTCCAGCCTTTCGGAAGCAGGACCCCCACCCTCTCCAGACTGATGGAGGATACACCGGATACTCCGCTGCCGTCTACACCAGAGACGCCTCTCAGGGTCACACTGGAcccgggggaggagaggaagagcaagaagaaaaagaagaaagacAAACTTATAAAGactgaggagatggaggagggggtcaGGGTGAAGCAGGAGCTGCTAGAGATGACTCACAGCCCAGAGGAGCCATATAAACTTCCTGGGCAGGAAACTGAGCTctcagaagagaagaggaagaagaagaagaaaaagaaggatAAGGACAGGGGAGATGTGGAGGACACTGTATATTCATCTTTTAATGTAATTAAAAAAGAGGTGGAAGTTAAAGTTGAACCAATGGACAGTTCCTATGGTGAAGTTGAAGATTCTGGAAAAAGGAAGAAAAAGGTGAAGAAAAACAGGCATGATGATGACTAGTCTGTTGTTTTTTTGTGGTAATCTGGCTTTGTGAagttataattataataatagtaTCATTCAATTAAGCAGTTCAACAAATAATTATTATGCTACTGTACTGTCATTTGGATTTTGGGGGGGAAATTTGATCATCTAATAAAGCCGAGACGATAACACATACTGGAGTGTACAGACTTGTGCCTCTATTCAcacgaaacaaaaatataaacgcaacatgtaaagtgttggtttcatgatctgaaataaaatatccctgaaattttccatactcacaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2169594 lncRNA upstream 2394 6596671 ~ 6599586 (+) True G1896720
TU2169592 lncRNA upstream 6734 6595010 ~ 6595246 (+) True G1896718
TU2169571 lncRNA upstream 52674 6548689 ~ 6549306 (+) True G1896698
TU2169318 lncRNA upstream 79342 6521325 ~ 6522638 (+) True G1896494
TU2169317 lncRNA upstream 80756 6520883 ~ 6521224 (+) True G1896493
TU2169595 lncRNA downstream 568 6604589 ~ 6604790 (+) True G1896721
TU2169612 lncRNA downstream 92186 6696207 ~ 6697600 (+) True G1896738
TU2169655 lncRNA downstream 125638 6729659 ~ 6730771 (+) True G1896780
TU2169660 lncRNA downstream 133508 6737529 ~ 6740303 (+) True G1896785
TU2169674 lncRNA downstream 153453 6757474 ~ 6760858 (+) False G1896798
XM_021582000.2 mRNA upstream 138152 6461766 ~ 6463828 (+) True sertad3
XM_021581998.2 mRNA upstream 141110 6457810 ~ 6460870 (+) True LOC110503591
XM_021581995.2 mRNA upstream 232122 6363057 ~ 6369858 (+) True LOC110503588
XM_021581993.2 mRNA upstream 245483 6285718 ~ 6356497 (+) False LOC110503587
XM_021581994.2 mRNA upstream 245483 6285719 ~ 6356497 (+) True LOC110503587
XR_002470496.2 mRNA downstream 191124 6795145 ~ 6818270 (+) False LOC110503605
XM_021582023.2 mRNA downstream 255015 6859036 ~ 6896546 (+) False LOC110503606
XM_036961816.1 mRNA downstream 273146 6877167 ~ 6896546 (+) True LOC110503606
XM_021582027.2 mRNA downstream 311322 6915343 ~ 6932895 (+) False LOC110503608
XM_021582028.2 mRNA downstream 311322 6915343 ~ 6932895 (+) True LOC110503608
TU2168015 other upstream 1079115 5521415 ~ 5522865 (+) True G1895266
TU2168012 other upstream 1081948 5519021 ~ 5520032 (+) True bl1s3
TU2166742 other upstream 2157004 4444623 ~ 4444976 (+) True G1894083
TU2166691 other upstream 2260576 4336603 ~ 4341404 (+) False LOC118944093
TU2166174 other upstream 2311382 4289908 ~ 4290598 (+) True G1893604
TU2169780 other downstream 336395 6940416 ~ 6941556 (+) True G1896894
TU2169820 other downstream 413774 7017795 ~ 7018558 (+) True G1896931
TU2170012 other downstream 712931 7316952 ~ 7328311 (+) False LOC110503629
TU2170011 other downstream 719258 7323279 ~ 7328311 (+) True LOC110503629
TU2170319 other downstream 1472185 8076206 ~ 8079986 (+) True LOC118944073

Expression Profile