RNA id: XM_036961816.1


Basic Information

Item Value
RNA id XM_036961816.1
length 2675
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC110503606
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6859036 ~ 6896546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCTTGATGACAGAAAAACTTTGACAGCACTGGTCAGAGACAGTCCCTCTACTGCAAGTTACATGCAACCAGAACCCCTGGCTCATGTGCTTCCTATTACTGTTTGTGATCGGTGAGAGATGCCAGCTTCCACACAAGATTAACTGTGTTGTAGAAGCTTGGGAAATAGGAAAAACACAACCTGAAAAACTGGGGCGCAGTTTAGATAACACAACTGACGAGATATCCTTAAACCTTGTGTTTGGTTGGTGAATTACTTGCAGTTGCTCTCTTGCTTTCATTCTCGAAAGACTGTGACTCTACTCTATATCACCAGGTTGGCATTGATACATGAAGTCATTGACATGggtgtGGGCTATGGGGTGGAGGTCTGAGGCAATGCCTGGTTCTGGCCCCCCTGGGTCAAAAACACCCAGCAGCCCTGAGATGATGAGTGGCCCCCCGTCCTGGCACTCCTCTAAGTGATGAAGACCCCTgccatcctcctcctcattctgTCTGTCCTGTGCAGAACTGTGCTTGTGTCAACGAAGACGGTGAAGCACACGGTGGAGGAATGGAACAGATACAGGAACGAGTGCCTGCTGAGAATGAGCACGGACCCCACACCCCCAGGCTTGTTCTGCGGCCGTATGTTTGACATGTACGCCTGCTGGCCGGAGGGTGTCCCCAACACCACGGTTAAAGTGCCCTGCCCGTGGTACCTCCCCTGGTACAACCAAGTTCGTAATGGGTATGTGTTGCGGGAGTGTGGGCCTGATGGCCAGTGGGCCGTTAACAACACCAGCAGCACATGGAGGGACCACTCCCAGTGCAACGCAGACAACAACCAGCAGGTGGCACAGGAGAACCAGATGGTGATCTTGGCCTACTTCCGGGTGATGTACACTGTGGGCTACTCTCTGTCCCTGGCCAGCCTTTCCCTGGCCCTCATCATACTGCTCATCTTCAGGAAACTAAGGTGCACCAGGAACTATATCCACACCAATCTGTTTGCGTCCTTCATCCTGCGAGCCATATCCATCCTCACCAGAGATGCTGTCCTCACCAGGGACACCCCAGAGTTCAGAGACAACAGAGACGTGTCCAACGTCCTCAGTGATAAGGCCCTGTCTGGCTGCCGTGTGGCCCAGGTGCTGATGCAGTACTGTGTGGGGGCTAACTACTACTGGCTGCTGGTGGAGGGCCTGTACCTTCACAACCTGCTGGTGCTCATGGTCTTCTCAGAGAACAGCTACTTCTGTGGATACCTCTTCATCGGCTGGgGATCCCCAGTGTTATTTGTGGTCCCCTGGATTATAGTGCGGTACCTGTATGAGAATACACGGTGCTGGGAGATCAATGAGAACATGGCGTACTGGTGGATCATCCGCACACCCATCCTCCTGGCCAttctgGTCAACTTTTTCATATTTATTCGGATCATACAGATCCTTGTCTCCAAATTGAAGGCAAACCAAATGAGGTACACCGATTATAAATTCAGGTTGGCTAAGTCCACTCTgaccctcatccctctcctcggCATCCATGAGGTTGTCTTTGCCGTGATGTCAGAGGAACAGACCGAGGGCGTCCTCCGAAATATCAACCTCTTCTTTGAACTTTTCTTCAACTCTTTCCAGGGTCTACTGGTTGCCATCCTGTACTGCTTCGTCAATAAAGAGgtGCAGTCAGAGATAAAGAAGAAGTGGCAGCGATGGAAGCTGGGCATGAACGTCCTGGACGACCTTCGCAACACGGGCAGCAACACGCCACAGGGGGGCACCGGCGGCGGGCAGTGCCACCACGACCCGCCCTGCCAGCCTGACTGTCCACAGGAGGATACCCACAACCTCTTCTCGGACGCCTCCGCCTCGGGGCCGCATGCCCACCCACGCCCACACCACCACCCAGGGGCCAAGAAGGGAAAGGCCTACTGCTACATTTCCGCCCGCAAGCAGGTGCTGAACGGCCTTGATGGAGCTCCGCTGGAAAAAGGGGGCGGAGAGGGAGCCATCAAATACTCTGAGAGCTACTGCTGAGTGGCTCGGCGAGGGGGATAACGACTAGCTGGCTACCTTTGTAATTTCTAGTGGGTGGAATCCAAAGCAGACAACCTGCCTGCTTCAGTTGTGTACTTCCAGATCTATGTGGCCGACTGTAGTTGGTGTTTCATCGAACCCATGTCTTAATAGTTGTGTGAACATGATCCGGGACTCATTGGATGATTGCCAGAATGTTTTTTCTGCACTGGCCAATCAGGCTGTGTGTTGTGACTCCTATAGGTTTTCAGTGGCAGATAAGATGACCCATCCCAAGTGCAATATCGCCTCAATCGACCTAGattgactttttaaaatgttattttacctttatttaacttacttacaatgacagcctaccccggccaaacccggacgacgctgggccaattgtatgccgccctatgggacttccagaTGTTGAGGAAAGCTTCTTCAATTAGGAAATGAACACCGTCCAACCTTGATCTGCTCTGATTCGACTGTTTTGGGGGTTTGCTTCTTTTGTTTTCTACCTCTTGCTCTACTAGTGGACAAAATGGAAACGTTATGTGCCAACCGTGGACCGTCTTTTCGTGTGCAATGGATAATTCTAACAATAGTGTGTCTATATGTTGGTATCGGACAAACTCAGTGAGGGACTTAGAGAA

Function

GO: NA

KEGG:

id description
K04583 GCGR; glucagon receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2169729 lncRNA upstream 41292 6835627 ~ 6835875 (+) True G1896847
TU2169726 lncRNA upstream 48188 6828672 ~ 6828979 (+) True G1896844
TU2169685 lncRNA upstream 58023 6818797 ~ 6819144 (+) True G1896806
TU2169686 lncRNA upstream 60065 6795392 ~ 6817102 (+) True LOC110503605
TU2169678 lncRNA upstream 100405 6768803 ~ 6776762 (+) True G1896799
TU2169758 lncRNA downstream 12666 6909212 ~ 6909443 (+) True G1896875
TU2169761 lncRNA downstream 17758 6914304 ~ 6914545 (+) True G1896878
TU2169762 lncRNA downstream 18214 6914760 ~ 6915008 (+) True G1896879
TU2169772 lncRNA downstream 36409 6932955 ~ 6933240 (+) True G1896888
TU2169818 lncRNA downstream 115854 7012400 ~ 7012603 (+) True G1896929
XR_002470496.2 mRNA upstream 58897 6795145 ~ 6818270 (+) False LOC110503605
XM_021582015.2 mRNA upstream 273146 6601980 ~ 6604021 (+) True LOC110503600
XM_021582000.2 mRNA upstream 413339 6461766 ~ 6463828 (+) True sertad3
XM_021581998.2 mRNA upstream 416297 6457810 ~ 6460870 (+) True LOC110503591
XM_021581995.2 mRNA upstream 507309 6363057 ~ 6369858 (+) True LOC110503588
XM_021582027.2 mRNA downstream 18797 6915343 ~ 6932895 (+) False LOC110503608
XM_021582028.2 mRNA downstream 18797 6915343 ~ 6932895 (+) True LOC110503608
LOC110503308 mRNA downstream 51332 6947878 ~ 6953071 (+) True LOC110503308
XM_021582032.2 mRNA downstream 67819 6964365 ~ 6973957 (+) False LOC110503611
XM_036962055.1 mRNA downstream 67828 6964374 ~ 6973957 (+) True LOC110503611
TU2168015 other upstream 1354302 5521415 ~ 5522865 (+) True G1895266
TU2168012 other upstream 1357135 5519021 ~ 5520032 (+) True bl1s3
TU2166742 other upstream 2432191 4444623 ~ 4444976 (+) True G1894083
TU2166691 other upstream 2535763 4336603 ~ 4341404 (+) False LOC118944093
TU2166174 other upstream 2586569 4289908 ~ 4290598 (+) True G1893604
TU2169780 other downstream 43870 6940416 ~ 6941556 (+) True G1896894
TU2169820 other downstream 121249 7017795 ~ 7018558 (+) True G1896931
TU2170012 other downstream 420406 7316952 ~ 7328311 (+) False LOC110503629
TU2170011 other downstream 426733 7323279 ~ 7328311 (+) True LOC110503629
TU2170319 other downstream 1179660 8076206 ~ 8079986 (+) True LOC118944073

Expression Profile