RNA id: TCONS_00004996


Basic Information

Item Value
RNA id TCONS_00004996
length 2161
RNA type mRNA
GC content 0.46
exon number 12
gene id XLOC_002687
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17485945 ~ 17501528 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAGAGCAGCACTTCACTGACACATACAATGACGGGGGCTTTACGACAACTGACAAAAAGTCCTGTACTCGTTGCAGCCATTCTCATTGCAGGAATTGGAGGGACCTTCCAATACGGCTTCAATATTTCTGTCCTGAACTCCCCGTCACCCTTCATTAAAGAGCTGGTGAACAGCACCTGCCAGCAGCGCTATGGACACTCCCTGGAGCCCTGGGAACTGTCCCTCATCTGGTCTTTCATTGTGTCCATTTATAGCATCGGAGGGTTGGCCGGGACACTGTATGCTGGACGTGTGGCTGGCATGTATGGAAGGAAGACGACTCTGCTTTTGAACAATGTTTTGGCAATCAGTGGAGCCATCCTCATGCTGTTCAGTAAAACTGCGCTCTCGTTTGAGATGATCATGGTGGCGCGTGTGCTGTACGGCATAAACGCTGGTGTGAGTCTGACTGTCCACACAATGTATATCTTGGAGTGCGCCCCCAAAAGGCTGCGTGGGATGGTTGGCGTGTCTGTGGCCTCTTTTGTCTCATTGGGGAAGTTTTCCGGCCAGCTGCTTGGGATCAGtGAGGTGTTAGGCACTGAGGAGGGCTGGATTTGGCTGCTGGCTTTCAGTGGTGCGGCTGGGCTCCTGCAGCTACTGACTCTGCCCTTTCTCCCTGAGTCCCCGCGGTACCTGCTGCTTGAGAAAGCAGACAAACACGGCTGTGAGACGGCTCTGCGCAGGCTATGGGGAACTGAACGGGACCCTGGACCAGAGATGGAGGAGATGTTGGCTGAACATGCCGCCCTGAAGGGTGTAAAGATCCACAGACTCATGGACCTTTTCCTGGACCACAATGTTCGCTGGCAGCTGTTTACCATCATCGTCACATTCATTACTTTGCAACTTTGCGGCATCAATGCTGTCTATCTGTATTCATTTGATGTCTTTCAAGCTGCTGGTATTGCAAAGGAGAACTTGCGCTATGCTGCTCTTGGGACAGGCCTGTGTGAAGTCTCCACCTCCATCGCCTGCGTGCTTATCATTGAGAGTACAGGGAAGAGATTGCTTCTCTTTAGGGGTTACATCTGCATGGCCGCCTCACTGGCTCTTCTCACACTCACACTTTACCTTCAGGATTTTGTGTCCTGGATGCCATATTGCAGCATGGTCCTCATTTTCATATACATCTTCTTCTTCTCTAGTGGACCAGCTGGAGTGACAGCACCACTTCCTGGTGAGATTTTTACACAGTCCTACAAACCACCAGCATTTGTGGTTGCCTGTGTCCTCAACTGGATCGGACTCTTCCTAGTGGGCATGTTATTTCCTCTCATTGTGGAGCATTTGGATTATTTCTGCTTCCTTGTGTTTTTCGTGTTTTGCTTCTTCTctggtgtttttgtgtggttcCACGTGCCTGAAACCAAGAATAAAACTGTTCTGGAGATCACAGAGGACTTTAAGAAAATGCACCAGAAACGTAGACACTCATTACAGTCTAAAATGAGCTCAATACTCATCAACGACATACAGTCCACCAAATGTACTAAACTTTAGCACCACTACAAAATCAGTCCTGTAGTCAAATTTAGAAACCACTAAAATTAGcaacagctaaaaaaaaaggGCCTTTTCCACCCAATAATCCTTGATTTCTGAAGGAAATGTGGTTTGTTTGTGTCATGTTGGAGGATATCAGGTGTTACAATGTAATCCACATCCCTTTTCTAAACTcaaaattcaatttcaattaGAGGGGAGCTGAATGATGAATCAATAAATGTGTACTTTGTGATGTCGGGTTCAGGTTTGGCCTGATACAGTTGTTGTGGAGCAATAGTTGTATTGACGCTGTTGCTCGGATGGATCTGTAAAGTGATTAGTAAGGCCTGAGTATCGGTTGAGTGCTCAGAGGTGTGTGTTGACCTCTTGCCACACCAAAGAATTATCAAGTTAAAAGTGGACTTCGCCAAAATGACTAAGCAAAGCAGCATCTCTCATAACTCGTCCATGTTTGGGTGAGTCTCGTGAATTTTGGAAGAAAGGTTAGTTTAATGTTTAAATGCTGATTGTGTTTTTTTGTCATGAATGATTTTAAGCATAAGATAAAGTGATTGAATTATATTATACATGTGtctaaaacacaaataaagactaATACTTTTACTTGTAAAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061215-118 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; heart; integument; kidney; and muscle.

Ensembl:

ensembl_id ENSDART00000144847

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004994 lncRNA downstream 22528 17460789 ~ 17463417 (-) False XLOC_002686
TCONS_00006025 lncRNA downstream 43524 17437490 ~ 17442421 (-) False XLOC_002685
TCONS_00006024 lncRNA downstream 43524 17437490 ~ 17442421 (-) True XLOC_002685
TCONS_00006023 lncRNA downstream 43963 17437490 ~ 17441982 (-) False XLOC_002685
TCONS_00006022 lncRNA downstream 45279 17437490 ~ 17440666 (-) False XLOC_002685
TCONS_00006026 lncRNA upstream 8452 17509980 ~ 17511199 (-) False XLOC_002688
TCONS_00006027 lncRNA upstream 80564 17582092 ~ 17587901 (-) True XLOC_002691
TCONS_00005011 lncRNA upstream 229765 17731293 ~ 17745344 (-) False XLOC_002694
TCONS_00005008 lncRNA upstream 229765 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00005006 lncRNA upstream 229765 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00004993 mRNA downstream 1181 17460361 ~ 17484764 (-) False XLOC_002686
TCONS_00004992 mRNA downstream 1183 17460358 ~ 17484762 (-) False XLOC_002686
TCONS_00004995 mRNA downstream 18955 17462543 ~ 17466990 (-) True XLOC_002686
TCONS_00004990 mRNA downstream 201890 17254502 ~ 17284055 (-) True XLOC_002683
TCONS_00004988 mRNA downstream 253573 17223681 ~ 17232372 (-) False XLOC_002682
TCONS_00005000 mRNA upstream 41748 17543276 ~ 17550239 (-) False XLOC_002690
TCONS_00005001 mRNA upstream 42152 17543680 ~ 17550931 (-) True XLOC_002690
TCONS_00005002 mRNA upstream 51205 17552733 ~ 17587832 (-) False XLOC_002691
TCONS_00005005 mRNA upstream 198488 17700016 ~ 17710637 (-) True XLOC_002693
TCONS_00005009 mRNA upstream 229904 17731432 ~ 17745374 (-) False XLOC_002694
TCONS_00004991 other downstream 143464 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00004980 other downstream 329270 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004978 other downstream 353035 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004975 other downstream 402568 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004954 other downstream 1866930 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004998 other upstream 8452 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004999 other upstream 32082 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00005003 other upstream 61447 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00005004 other upstream 125600 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005042 other upstream 2982286 20483814 ~ 20483930 (-) True XLOC_002716

Expression Profile

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