RNA id: XM_021582038.2


Basic Information

Item Value
RNA id XM_021582038.2
length 2790
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110503613
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 7022975 ~ 7026660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCATTCCTGGCGTCATACCAAATTCCTATTCTGGTAAGAGTTCGTACATGTTGCGCTCGTGGCCGCCGTGGGTCATGGAAAAAGCGCGATCAGAGTCTGCGCAACTCAGCATTCTTCTCGTCGTCTGTGCGAAGTTTATGAAGCTACACTGCAAgaggaggaaaaaaaaaaaacattcgtCAATATTGGTAATTCCGGCTATATCCAGTGAAACACAACTTCACACTTGTTATTGTTAATTACTAAGCTAGTTGaagttataaatatatataaacaatTTGCAAACAAACGCGGAcgacctagctagccagccaacgttagctagctagcgaccGACATTAGCCAACGTTCCTTCAAAATGTTAGTTACTATAGTTAGGTAGAATGCATACAACGCTCGCAATTGTCTTATCAGTTTATCTATAACACATTGGTAAAGATCTGCGTTCGTTTTCTAATTTGTATTTTGTCCCCTTCGTTGCATGGCAGGATGCACGTTTAACGTGGTTGGAAACACTGGCCTTCGACGTTGTTCCGCAAAACATCAAAGCAAAATAGCTAACGTTACTGTAGCTGGTTAGAAGGGGGCTCAACAAAGAACCAGGAAGCATAATGCTCATTGGCCTAGCAAGAGAGTGCTGGCAGTGCCAGGGGTGGTGCCCTCACAGGTATAGGTGGCTATCTCTTGTGCGTGTAAACAGGCCTAGGGGTGCAACATGAATTTCAAATTCACCTATAGTGAAATAGAGGAACTTGGGGGCAACTTGCCCATGAAGAAAAGGAAGTCGCGCTTCACCTTCGATGAAGTCCATCTGCTGCTGTCTGAGGTCAAAAGAAACAGGCACATCCTCGTAAGCAAGTTCAACCAAGGCGCCTCGTCAGACCTGAGGAAGCGAACATGGGCGGACATCGCGATTTGCATCAACAAAATCAGCGAGTGCCAACGGGAGGTCATGGAGATCGTCAAGAAGTGGGCGGACCTAAAGTGTGACGCCAAGCGCAGGATGGTGGCCATGCGAGGGCCTAATGGTGTCCGTATCTCCCAGAACCTGTCACCGGTGGAGAAAATGGTGCACGAAATACTAGCCATGTCCCCTCCGAACAAGGCCACCATGGGCAGTATGAATCATGAACCTGAGGAGAATGACTTTggtgacatgtcagagatgtcgaCTCGCTCCTCTGGCACCTCTAATGGTATGGCTGGCCTTCATCATATGGGTATGCCTGGCACCAGCCCCCACGCCATAGGCTCGTCTATGTCACCTTTCTCAACTCGAGATAAAGATATTGGCATGTTTTCTCGGATGCCATTTGGCCGGGATCCTTCTCAGTCGTCTCATGATTTTTCATTCATGACACCAGTCGATGAAGACAACAGTCTGGGATTTGAGGACCTAGAAGAGGAGCCGCGGCACATGGGCTCCTTCCGCCCTCCTGCTGAGCCTCGTCGCACCTACTCCAGATTTGTCGCCGCTTCCACCGCTGTGTCTTCCTCCATGGCTActtcctcatcctccctcccagctccctcctcttcctttctccctgctcctccctcctcttctacctctccAGGGTCAGTCATGGGACAGGGGGCAATCCGGAAGCAGCTAGCCCACAGTGCCTCCCTCAGTCTCAAGGAGCAGCAGGCCACTACTGCCCTGCTAGGGGCCGTGTCGGGGTCTCTGGGGGCCCTTGCCCAGTCCGTGCAGCAGCTGGTGGAGTCGCAGCAGGAGTTTGTACGCGACTCCCTGGAGATGCagcgagagagtgtgagtgtcctGCGAGACTTCTCCACCAATGCCCTGGCTCTCCTGCGGGACAAGGTCAACGGCCACCCGCCTTCTTAACTCCCAGTTCACCTACAGAACCCAACACAACATACACACGGACCCTACCTGTGAAGTGCTTGCCTGTGGACTGAGATCATGTCATTAATACTGTTTGCAGATTCACATTGAGAATGAGTATGCTGCCACTAGTATAGAGTACTGAATAGCAGGAAGCCAAAATAAAATTATGAATATCTTTATATACTGGAGATGAGCTTTCTAACTAGTGACTGTTTTGTGAAAATTTTGATGATAAAGAGATCCATGTGTCATGGTTCCAGAACTATGgtaaatcacttttttttttactgaatggAACAAGAGTGGACATTGCAAGGATGTCTGTCAAAGAAAAACTTGTGCAATACTCTAAAAACGTTTTTTGAGGGTAAGCGAACTGTTTATCTGAGCCTGTTTTGTTTTACATGGTCTCATTTGTAGGTTTCCTCTAACAAGTATGCAAAGACTGGTCATCCAAACACTTCAAGCATAACCAGCCACATTTCTAGATTCATTTGGGTCAAATCGATTAGATTACTCACACAAAAAAAAGAGCAGCACATACATGTGGAAAGTATGAAAGATTACTATCCAAAGGTTAGGTGGTTTGGTTTTTAAACTGGCAATAAATCCCACTACAACTACGAGACGACTAAATAGAAACTGGCCATATTTGTAGCATTTGCACTTCAATTTAATGTATTTTCATTTTGTATTGAGTTTAAATTATATTGAGTGTCCAACTTTTTAGGAAAGTTTTGAGAATGTTTTAGATATATTTTGtcaatgctgaagaaatgtttttATGAAAAGTAACCTTTTCACTGAACTTCAATTAACTTTTGTTTTTCCAGACTGAATGATTTTTAAAACATtatctagactactgtactgtaacatGTAATATGTGACTCCTTCAACCAAATCTTAAGAATAAAACAACCTGTTTTGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2169818 lncRNA upstream 10372 7012400 ~ 7012603 (+) True G1896929
TU2169772 lncRNA upstream 89735 6932955 ~ 6933240 (+) True G1896888
TU2169762 lncRNA upstream 107967 6914760 ~ 6915008 (+) True G1896879
TU2169761 lncRNA upstream 108430 6914304 ~ 6914545 (+) True G1896878
TU2169758 lncRNA upstream 113532 6909212 ~ 6909443 (+) True G1896875
TU2169884 lncRNA downstream 71786 7098446 ~ 7160964 (+) True G1896985
TU2169909 lncRNA downstream 166902 7193562 ~ 7193766 (+) True G1897010
TU2169952 lncRNA downstream 236415 7263075 ~ 7286921 (+) True G1897050
TU2170026 lncRNA downstream 306514 7333174 ~ 7335630 (+) True G1897090
TU2170029 lncRNA downstream 310931 7337591 ~ 7337796 (+) True G1897093
trnar-ucg-5 mRNA upstream 313 7022590 ~ 7022662 (+) True trnar-ucg-5
XM_021582039.2 mRNA upstream 452 7013086 ~ 7022523 (+) True LOC110503614
XM_021582035.2 mRNA upstream 31947 6986712 ~ 6991028 (+) False LOC110503612
XM_036962056.1 mRNA upstream 31947 6986721 ~ 6991028 (+) False LOC110503612
XM_021582036.2 mRNA upstream 31947 6986722 ~ 6991028 (+) True LOC110503612
XM_021582043.2 mRNA downstream 15 7026675 ~ 7029192 (+) True LOC110503615
XM_021582044.2 mRNA downstream 3309 7029969 ~ 7063089 (+) False LOC110503617
XM_021582045.2 mRNA downstream 13911 7040571 ~ 7063089 (+) True LOC110503617
XM_021582046.2 mRNA downstream 44330 7070990 ~ 7076958 (+) True LOC110503618
XM_021582055.2 mRNA downstream 90356 7117016 ~ 7120346 (+) True LOC110503621
TU2169820 other upstream 4417 7017795 ~ 7018558 (+) True G1896931
TU2169780 other upstream 81419 6940416 ~ 6941556 (+) True G1896894
TU2168015 other upstream 1500110 5521415 ~ 5522865 (+) True G1895266
TU2168012 other upstream 1502943 5519021 ~ 5520032 (+) True bl1s3
TU2166742 other upstream 2577999 4444623 ~ 4444976 (+) True G1894083
TU2170012 other downstream 290292 7316952 ~ 7328311 (+) False LOC110503629
TU2170011 other downstream 296619 7323279 ~ 7328311 (+) True LOC110503629
TU2170319 other downstream 1049546 8076206 ~ 8079986 (+) True LOC118944073
TU2171300 other downstream 2330391 9357051 ~ 9359164 (+) True G1898300
TU2171315 other downstream 2416634 9443294 ~ 9444057 (+) True G1898315

Expression Profile