RNA id: XR_005039336.1


Basic Information

Item Value
RNA id XR_005039336.1
length 1401
RNA type mRNA
GC content 0.39
exon number 4
gene id LOC110503640
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 7512805 ~ 7515006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtaattattttcaattaaaattgtcaaaaaatATTCATAGCAAAGagacatttctcaagcaagaatttagctaggattGTCTGGTAGTGTTCTGAGTGGCGATGGAAAATTtgaaaactagctgtttttgGGGGAGGTTTGGAaatctttcttattggtctattgatgttaacaggcaggccaaaactccataccaccactatcatcattTTCGCAATTTCACAGTATCAtgccaacctcagtgtggaaatattaATACatatgtttttgactgcactgggtctAAAAAGTTTAACCTTAGCATCAGGTACTCTGTTGTGTTTAAAGTATCTccatttaaaggcccagtgttaTTTCGACCTCAATGTACTCATTTTGACAATTACGTTTACTTTtgaaacttaagtatatttaaaaccaagtgctttttgacttttactcaagtagtattttgctAGGAGactaatttgtatttttttacttttacaattgggtactttttctaccactgcaAACAGGCTATTATTGCTGTAACGTTAACTAGCCAACGTTACATTGGCTACACAGTAAGTATAGCTAGGTCGCTGTTTTTCTATATTAAACTACGTACGGTATGTTGTAACACGGAACAAAATAAAGTTTGCGCCAGAAGGGCCCTGTTTGAACGCATAGTTACGCTAACTCCGTATTCACAATGTACAATACTCAGTGAGTCAACTCAAATCCGGCTAACTGgaatttgtctttcagcataaAAATATCCTGCCTCTTCTTCACCAGTGAATCAGGCAGCACTTCAGGGTCATCGCTGATGAAAGGCCTGCAACATGACAAGGAGGAGATACTTGAGGACGAAGAGTATTCGattgagacacagacacacatacacaggacaGGCAGGTGAACATCAACTGGCAGAGAAGCAGCTGAACTGGTTCCCCCCTAGCCCTTCTAGTTTGATGCTGACAGAGGTGGCTGCTGCACATGCTAAACTGGTGGTGCAGGTCATAAAAAtgctctagcctggtcccagatccctCTAGCCTGGTCTTGCTAACTCCTAATGTATGATAGTTGTCATGCCATGTTTCCATAGGAGTTGGCTATATAGTACAAACAGATCATAGACCAAACTAACATTTGGCTGATTTTCAGAACCGAAAGTGAAACTTCAGTGTACTTGAGGACTACTCTAGAAATTGTTGGCTTTGTTGCAAGATAGAAAGGAGAATAAGACGTGGTTTGCTTGTGTGTCACCTGAATGTGAGGGCAAGCGGTTAtgtatgatatggttatgatagtAATGTAGGCCCTAACATGCACTTTGTTTTCAGGTTTGAATGAGACAATATATTCCCCTAACCTTATTattttaataaagtgattgtttATGAATATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2172719 lncRNA downstream 85635 7426951 ~ 7427170 (-) True G1899585
TU2172715 lncRNA downstream 91973 7420569 ~ 7420832 (-) True G1899581
TU2172684 lncRNA downstream 107055 7404597 ~ 7405750 (-) True G1899553
TU2172662 lncRNA downstream 178146 7334318 ~ 7334659 (-) True G1899535
TU2172657 lncRNA downstream 184292 7327223 ~ 7328513 (-) True G1899530
TU2172760 lncRNA upstream 16531 7531537 ~ 7587823 (-) True G1899625
TU2172794 lncRNA upstream 43223 7558229 ~ 7558601 (-) True G1899644
TU2172816 lncRNA upstream 61435 7576441 ~ 7611786 (-) True G1899660
TU2172766 lncRNA upstream 67214 7582220 ~ 7585628 (-) False G1899626
TU2172762 lncRNA upstream 68618 7583624 ~ 7585628 (-) True G1899626
XM_021582074.2 mRNA downstream 5553 7504941 ~ 7507252 (-) True LOC110503637
XM_021582065.2 mRNA downstream 73341 7432304 ~ 7439464 (-) True LOC110503632
XM_036961338.1 mRNA downstream 217333 7272344 ~ 7295472 (-) True spint2
XM_021582059.2 mRNA downstream 217341 7272344 ~ 7295464 (-) False spint2
XM_036961128.1 mRNA downstream 256141 7193970 ~ 7256664 (-) False LOC110503626
XM_021582093.2 mRNA upstream 220127 7735133 ~ 7738306 (-) True LOC110503655
XM_021582091.2 mRNA upstream 223447 7738453 ~ 7744427 (-) False LOC110503654
XM_036961313.1 mRNA upstream 223447 7738453 ~ 7746131 (-) True LOC110503654
XM_021582094.2 mRNA upstream 357356 7872362 ~ 7875174 (-) False LOC110503656
XM_021582095.2 mRNA upstream 357356 7872362 ~ 7875185 (-) True LOC110503656
TU2169441 other downstream 1052740 6458521 ~ 6460065 (-) True LOC110503590
TU2169340 other downstream 1280997 6182412 ~ 6231808 (-) True LOC118944082
TU2169333 other downstream 1314442 6182412 ~ 6198363 (-) False LOC118944082
TU2168814 other downstream 1643587 5868896 ~ 5869218 (-) True G1896030
TU2167323 other downstream 3158869 4353578 ~ 4353936 (-) True G1894611
TU2173065 other upstream 531773 8046779 ~ 8047974 (-) True G1899875
TU2174075 other upstream 2055865 9570871 ~ 9574149 (-) True LOC110503680
TU2174329 other upstream 2490366 10005372 ~ 10008340 (-) False G1901072
TU2174330 other upstream 2490366 10005372 ~ 10012354 (-) True G1901072
TU2174494 other upstream 2690214 10205220 ~ 10205948 (-) True G1901206

Expression Profile