RNA id: TCONS_00004997



Basic Information


Item Value
RNA id TCONS_00004997
length 753
RNA type processed_transcript
GC content 0.54
exon number 6
gene id XLOC_002687
representative True

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17485945 ~ 17501528 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ACAAAAAGTCCTGTACTCGTTGCAGCCATTCTCATTGCAGGAATTGGAGGGACCTTCCAATACGGCTTCAATATTTCTGTCCTGAACTCCCCGTCACCCCATCGGAGGGTTGGCCGGGACACTGTATGCTGGACGTGTGGCTGGCATGTATGGAAGGAAGACGACTCTGCTTTTGAACAATGTTTTGGCAATCAGTGGAGCCATCCTCATGCTGTTCAGTAAAACTGCGCTCTCGTTTGAGATGATCATGGTGGCGCGTGTGCTGTACGGCATAAACGCTGGTGTGAGTCTGACTGTCCACACAATGTATATCTTGGAGTGCGCCCCCAAAAGGCTGCGTGGGATGGTTGGCGTGTCTGTGGCCTCTTTTGTCTCATTGGGGAAGTTTTCCGGCCAGCTGCTTGGGATCAGtGAGGTGTTAGGCACTGAGGAGGGCTGGATTTGGCTGCTGGCTTTCAGTGGTGCGGCTGGGCTCCTGCAGCTACTGACTCTGCCCTTTCTCCCTGAGTCCCCGCGGTACCTGCTGCTTGAGAAAGCAGACAAACACGGCTGTGAGACGGCTCTGCGCAGGCTATGGGGAACTGAACGGGACCCTGGACCAGAGATGGAGGAGATGTTGGCTGAACATGCCGCCCTGAAGGGTGTAAAGATCCACAGACTCATGGACCTTTTCCTGGACCACAATGTTCGCTGGCAGCTGTTTACCATCATCGTCACATTCATTACTTTGCAACTTTGCGGCATCAATGCTGT

Function


GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061215-118 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; heart; integument; kidney; and muscle.

Ensembl:

ensembl_id ENSDART00000138832

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00004994 lncRNA downstream 30064 17460789 ~ 17463417 (-) False XLOC_002686
TCONS_00006025 lncRNA downstream 51060 17437490 ~ 17442421 (-) False XLOC_002685
TCONS_00006024 lncRNA downstream 51060 17437490 ~ 17442421 (-) True XLOC_002685
TCONS_00006023 lncRNA downstream 51499 17437490 ~ 17441982 (-) False XLOC_002685
TCONS_00006022 lncRNA downstream 52815 17437490 ~ 17440666 (-) False XLOC_002685
TCONS_00006026 lncRNA upstream 8576 17509980 ~ 17511199 (-) False XLOC_002688
TCONS_00006027 lncRNA upstream 80688 17582092 ~ 17587901 (-) True XLOC_002691
TCONS_00005011 lncRNA upstream 229889 17731293 ~ 17745344 (-) False XLOC_002694
TCONS_00005008 lncRNA upstream 229889 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00005006 lncRNA upstream 229889 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00004993 mRNA downstream 8717 17460361 ~ 17484764 (-) False XLOC_002686
TCONS_00004992 mRNA downstream 8719 17460358 ~ 17484762 (-) False XLOC_002686
TCONS_00004995 mRNA downstream 26491 17462543 ~ 17466990 (-) True XLOC_002686
TCONS_00004990 mRNA downstream 209426 17254502 ~ 17284055 (-) True XLOC_002683
TCONS_00004988 mRNA downstream 261109 17223681 ~ 17232372 (-) False XLOC_002682
TCONS_00005000 mRNA upstream 41872 17543276 ~ 17550239 (-) False XLOC_002690
TCONS_00005001 mRNA upstream 42276 17543680 ~ 17550931 (-) True XLOC_002690
TCONS_00005002 mRNA upstream 51329 17552733 ~ 17587832 (-) False XLOC_002691
TCONS_00005005 mRNA upstream 198612 17700016 ~ 17710637 (-) True XLOC_002693
TCONS_00005009 mRNA upstream 230028 17731432 ~ 17745374 (-) False XLOC_002694
TCONS_00004991 other downstream 151000 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00004980 other downstream 336806 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004978 other downstream 360571 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004975 other downstream 410104 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004954 other downstream 1874466 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004998 other upstream 8576 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004999 other upstream 32206 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00005003 other upstream 61571 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00005004 other upstream 125724 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005042 other upstream 2982410 20483814 ~ 20483930 (-) True XLOC_002716

Expression Profile


Expression of TCONS_00004997 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.
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Expression of TCONS_00004997 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.