RNA id: XM_021582151.2


Basic Information

Item Value
RNA id XM_021582151.2
length 3503
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC110503691
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 9892221 ~ 9897938 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTAGCCAATGAGACTAGCGAAACCATTGCATTGCGGTAATGCGGTTCAGAGAGGGAGACAAGTGAATTGTGCGGCCGACAACAGTCAGGCAGGTCTCTGGGGCAATAAAAACAGTATTTTATGTTCGTTTTACATCCGTAATGTGTTTGAGATGTTTGTGTTTTATGCCATGATTGACTAATTCCTCTGATAAGACAGAAAGGGGTGCTTTGGCGGATGATCTTTAGAGGGCTGCATTCAGCAGTTGCTAACAAACGTTAGCTAGCCGCCGCCGGGCGGTCTGTTGTTATAGTCTGCATGGTGGTTCTGAGAACCATGAGCCGTGCTGCACCCCACACTGGAGGCCGTACTCACTCAAACCAGGACAGGCAAGGCGGATCGGAGGGTGGGACACACGGATGTCAACTGTCAGCTTCCCTTTTTGACTGACTACAGACAATCGGGCCCAAAGGAGAAGCTACTAACAGTAACTGTCTGGCCCCTGGTGACATCCACACAATCAGAGCCCAGGACAGGACCACCAAGTAGGGTAGTCTCCCCTTAATGAAGATGAGTGCAGTCCGTGGAGGAACAATCACCTGGCGGCCACAGCCCTGGCAGGACGGTGACAGTGGGggaggggagcccctttcggacaGTGACTCTGAAGAAGAGGACTTTCCCGACGACAGCACCACTCCTTTAGGAGACTACGTCACACATGGGTTGAAGCAGCTATTGGATGCTCAGCAGCTGTGTGATGTCACTCTGTTAGTGGAGGGGAAGAGGTTTATGTGTCACAGAGTCCTCTTGGCAGCGGTCAGCCCGTATTTCCGTGCAATGTTCACTAGCCCCTTGGTGGAGTCCCGCCTTACTGAGATCCGATTGGAGGAGGTGACGCCGTCAGTCATGGAGACTGTCATCCAGTTTGTCTACACTGGGGAGGCGGGGCTCTGCCTGGACACGGCCGAGGACCTGTTTGTGGCGGCCAATCGGCTTCAAGTGATGCCCCTGCAGGACCTGTGCTCCAGGTTCCTGTTTGAACACCTGTCTGTAGACAACTGCCTGGGCATGTACTCTCTGGCCCGCTCCCACCACGACCAGCTGCTCCTGAGGGCCTCTCTGAGGCTGGTGGCCCAGCACTTCCCACGCGTGGCCCGCCAGAAGGACTTCCTGCTGCTGGACCCAGGTACCCTGGGAAGCCTGCTGGGCTCTGACCGCCTGGGCATAGACTCTGAGGCAGAGGTGTACGACGCGGCGCGCCGCTGGGCCGAGCACCAGCCCCTGGACCGTTACAGCCACATGCCGGCCCTGCTCCACCACCTCCGCCCTGGCCTGCTGTCCCTGGAGGAGAGCCAGCGGCTGAGCCAGGAGCTGGGACCTGCAGCAGCCGGGGAGGGCCTGGGGGGCCCGCTGAGGCCCCGGGAAGGCATGTTCGAGAAGAAGATAGTGTGTGTGGACCTAAAGCCACGGGAGGACGAGTCGCTGAACGAGAGGGACTTCACGGTGGACTGCTTCGACCCACGCACAGGAAAATGGGAGAAGCTGGCTGCCCTGGGCTCTTTGCTGTGCCCAGGTTGCACGGCCATTGGGGGGCGGCTGTTCGTAGCGGGGGGCATACTGCGGGGGGGCACGGTGTCCACGGAGGTCCATGAGTATGACTCTGTGTTGGATCGCTGGCAGGAGCGGTCGCCCATGGTGCAGCCCCGGGCCATGCTGGGTCTGCTGGGCTGTGGGGAGTCACTCTACGCCCTGGGGGGCTGCAACAGAGGAGCCATGCTGGACTCATGTGAGATCCTGGACCTGGCCTCTCTCCAGTGGGGCCCTGGGCCCCGTCTGCCCCTGCCACTGCGCTCCTTTGCCTGTGCCGCCTTGCGCGGCCGCATCTACCTGCTGGGCGGCACCACGCTGGAGCAGAACCGGGCGGTGGTGCACGCTGGCGTGCTCATCTACCACACCCTGACTGACTCATGGACCCGCGTGGGACTGGACTCTGGCGCCACCTGCCTGGCCGGAGGGGTGGCAGTGCGGGGAGGGGTCTGTGCCATTGGAGGCTACATGAGGGACGCCACAAAGTTTATAGATGGAAACTACACCCATCTGGAACCTCTGGAAGCCACGGGGCGGGTGCTGTTCTTCAGGGAGGGCCGGGGCACAGGGGTGGAAAGGGAGGTGACAGGGGCGGTGGTGTctgagaggggtgggggtggggggagtgACCGAGCCCCCAGTCCGGTGGTTTTCCCGGGGTTGCCCAGGCGGATTGCTGCCGGGGGCGTGGCCAGGTGGAAACGCAGGATATACGTGCTGGGCGGGGAGAACGGCTCCCGTTTCTATGACAGTGTGTACTGTTGGAAGCCTGGCTGGCGCAGCTGGGTCCAGAGACGGGAGAAACTACCCGGAGACACGGGGGGAGTCAGCCAGTTCGGCTGTACCACCCTCAAGTTCCCCAAGAAACACATCCTGTCCCGGCTGAGACTGGCTAGGGAGGACCGCAATCCTGATGATGACTAGCCACAGCCGGATGAATGAGTTGTGGCTAAGACCAGCATTCATGGGGTTTCAGTAATGAAATGTTATCAACTTTTTACACTTGAGAAAGTGGGGGGGGGAAGGGGACTCGCATCTGAATGTAACCACCGAATGCCACAACAACACTAAAGTTCTAATCAAAAATGATTTGAATGCATTTAAATGGTCTGAAACTTGTCTGCCTGTTGAACACACATCCTCAGCCTTTGCCACCTTCTATAGGAATTTAACGACTGCATAGGGCTATGTTTTGGATGACTGGCTGCGAATGTTTATTGAATTGTTTTATTTCTGCCTTTTCTATTCCAGACATTCTGAAATTCACTAAAGCATCCCATGTATGTAACTTTAGTCTTTCACTTTTCAATGATTCCAGggccatgttcattaggcacgaAACGGAAGAAAAtgaactgaaacagggaaggactaCCTACCAGGACTTGTCCAATAACCTAAACATTTATTTTCCATTGCAttatgttttgtaatgttttttgATTTAATGCTCTAATAAACATGACCTAGATTTCAGTCACTTGTTATTTTTGGTCAGTTTCTCTTCATCGCTATTCACCCTAACACTTATCCTCCTCCAATCAGATATAGTGTTATCATCAGAGGGGATAACGTTATTGCCCCCAAGTCGCCAAATTCTGTTTTATTTAATTTTCAGATGCATGGGTTACTTACCGCAAGAGCATGCAGATCTGCCAGAATACCTGACAcctaaatatttgttttattttagttGAACACGCCCCTTTGCTCTATAGAGCTGTGTGAAGATATTTGGAGtttaaatgtgtatgtgtgttggggtgtgaATGTTGGATTATGGAATGTAACAACAGGGGAGtcgtctcttcccccccccccccttaagagAAACGTCACCTGACTGATGTAATCTGATGTTTTTGAACTGAAAGTCAAATTGATAATTTGATGACAGTTATGCTATCAAATGATTAAAGGAATATTTGCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2174218 lncRNA downstream 69188 9757960 ~ 9823033 (-) True G1900970
TU2174193 lncRNA downstream 156973 9734960 ~ 9735248 (-) True G1900949
TU2174189 lncRNA downstream 160284 9731694 ~ 9731937 (-) True G1900945
TU2174163 lncRNA downstream 194772 9682428 ~ 9697449 (-) True G1900922
TU2174139 lncRNA downstream 262969 9623537 ~ 9629252 (-) True G1900903
TU2174215 lncRNA upstream 23933 9921871 ~ 9922678 (-) True G1900968
TU2174327 lncRNA upstream 34596 9932534 ~ 9937452 (-) True G1901071
TU2174343 lncRNA upstream 74856 9972794 ~ 9973426 (-) True G1901082
TU2174348 lncRNA upstream 86370 9984308 ~ 9985894 (-) True G1901087
TU2174349 lncRNA upstream 88204 9986142 ~ 9986610 (-) True G1901088
LOC110503315 mRNA downstream 5160 9880097 ~ 9887061 (-) True LOC110503315
XM_021582148.2 mRNA downstream 29640 9848222 ~ 9862581 (-) True LOC110503688
XM_021582149.2 mRNA downstream 30358 9848222 ~ 9861863 (-) False LOC110503688
XM_036961495.1 mRNA downstream 45832 9771424 ~ 9846389 (-) False LOC110503314
XM_036961496.1 mRNA downstream 45832 9771424 ~ 9846389 (-) True LOC110503314
XM_036961901.1 mRNA upstream 26373 9924311 ~ 9941768 (-) True LOC110503694
XM_021582157.2 mRNA upstream 81075 9979013 ~ 9984042 (-) True LOC110503696
XM_036961998.1 mRNA upstream 107402 10005340 ~ 10007581 (-) False LOC110503700
XM_021582161.2 mRNA upstream 107402 10005340 ~ 10008350 (-) False LOC110503700
XM_021582160.2 mRNA upstream 107402 10005340 ~ 10008380 (-) False LOC110503700
TU2174075 other downstream 318072 9570871 ~ 9574149 (-) True LOC110503680
TU2173065 other downstream 1844247 8046779 ~ 8047974 (-) True G1899875
TU2169441 other downstream 3432156 6458521 ~ 6460065 (-) True LOC110503590
TU2169340 other downstream 3660413 6182412 ~ 6231808 (-) True LOC118944082
TU2169333 other downstream 3693858 6182412 ~ 6198363 (-) False LOC118944082
TU2174329 other upstream 107434 10005372 ~ 10008340 (-) False G1901072
TU2174330 other upstream 107434 10005372 ~ 10012354 (-) True G1901072
TU2174494 other upstream 307282 10205220 ~ 10205948 (-) True G1901206
TU2174598 other upstream 501104 10399042 ~ 10399857 (-) True G1901302
TU2174716 other upstream 718986 10616924 ~ 10617481 (-) True G1901405

Expression Profile