RNA id: XM_036961288.1



Basic Information


Item Value
RNA id XM_036961288.1
length 3955
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC110503712
representative False

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10410751 ~ 10427770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGGCGGAAGCCAGTCGGGATGAGGCGTTGTTGTTAGAGCTTTCTCGAGTCAAACAGTCTCAGTATAGAATTGAACAATAATAAAACAAACCAGTAGTCTGATCCTTGAAGTTTACGAGTTTAATATGGATACGAAGGAAGAGCCTGTTGCACAACGGTCGGGTACGGATCAGCGGAAGGTGCGTTCCCGGGATGCGGCACGCTGCCGGCGGAGTCAGGAGACGGAGCTGTTCTACGAGCTGGCCCACACCCTGCCCCTCCCCCGCAGAGTCTCCGCCGACCTGGACAAGGCCGCCATCATGAGGGTGACGCTCAGCTTCCTTCGCATGCACCACCTCCGCTCAGCAGGGGACACGAGTGAGGAGCGAGTCACAGATGGGGACGAGGACACGATGGATGGGTTCTACCCCCGGGCACTGGCAGGCTTCATCATGGTGATGACCGAGGAGGGGGATATGATTTACCTGGGTGACAGCGTCGACAAACACCTGGGCATCCAACAGCTGGAGCTGCTGGGCCAGAGTGTGTATGACTTTGTCCACCCATGTGACCAAGAGGAGCTACGGGATCTCCTGGTGCCTAGGCCAGGTGTATTCAAGAAGAAACCAGTGCAGCAACACACAGAGATGACCTTCTTTCTTAGGATGAAGAGCACTCTGACTGTTAGAGGGCGCACTGTCAACATAAAGTCTGCCACCTGGAAGGTGCTGCACTGTACAGGCCACATGCGTGTGTGCTCCAGTGACGAGGACTCGTCACCCCCTGCAGGCAGCTTCATGACGGTGCTGTGTGAGCCCATCCCCCACCCGTCTAGTGTGGAGTTCCCTCTGGACCGCAGTACCTTCCTCACTCGACACAGCATGGACCTGCGCTTCACACACTGCGAGGGCAGGGTGGCAGAGCTAGTGGGATACGAGCCAGAAGATCTGATTGGCAAATCTGCCTACGAATTCCATCATGCCCTGGACTCGGATCATGTGACCAAGAGCCTGCACATCCTTCTGTCTAAAGGCCAGGTGTGCACCAGCCAATACCGTTTTCTGGCTAAGAGTGGGGGCTTCGTGTGGGCAGAGACCCAGGCTACAGTCATCTACAACAACAAGACCTCTCAACCAGAGGCTGTGGTCTGTCTTAACTTTATCCTCAGtgTGGTGGAGCAGGCAGATGTGGTGTTCTCAGTAGAGCAGACTGGCTGTGGGCTGAAGAGTGATCCTGTCTCTGAGGCCTCAGAGGAGACTTTGTGTGACAGTGACAACAGCAGCAGTGGAGAGCTCTTCCAACAGTTGAAGGAGAACCCAGAGGACCTCCTCCAACTGGCCCCTGTCTCCGGAGACCCCATCGTACCCCTCACAGACTTTGCGGAGCTGTCGTTCAGCCTTCCATCAAGCCCTGACTCCGCCCCAGTTTTCCCACAGGACCTGTGCACCCCCGAGCTGTGGACGCTCCTCTCACCCATATTCGACAAGCCCACCTCATCATCACCAACACCAGCACTGATCCCCATTGAGGAGCTGCCAATAGAGGATGAGGTGGAGAAGTTGTTTGCCGTCTGTCCAGAAGAGGTCGTGCAGAAGGAAGACCAGCCTGAGGACGTGGAAGTGGTTGATCTGGACATGCTGGCTCCGTATATCTCCATGGATGATGATTTCCTGCTCAGCGTCCAGCTCCCTGGGATCCCTGACAGCCCGTCCCCAGAGCCCCCCACTGCTACCAGGAAACGGAGCCATGAGCAGGATGAAGACATGCCCTCCCAGCTGATGAGTCAGGACAAGAGACCGAGACACTCTGTGTCACCCATCCAGCAGGAACTGCTTCTCAGCTACACCCTATTGgactgCCTGGAGGATACAGACAGCCCAGAGTTGGAGCTGGTGCCACACCCCCACAGGCGGAGTCAACTGCTGACGGACAGAGACCCCATCCTCGGGGAAGCCCAGGGACGATGTGACACCGCAGCCTTGATGAGGGACCTCTTCTTGTCCCGCCCACCTGACCCCCTGACCTCCTCTCTGACTTGAGGAAGCAGCTGCCAATCATCCCCTGCCAGCTGCGGAGTTCTGAGATCACAGCGCCTCAACAGCATTCACACACTCCCCAACCAGACGCGCGCATTCTCTCTGCCAGCGCCTCCAACTCAGAGACTTCGTCACGCTGGCCAACTATGTCCACAACAACAGCTTGCTATGGTTTTCTGCGAGGATGCCTGTAGCTTAAACGtggttcctcctcttctctccactcttGTATGTCTCATGTTCTAGGGGGTAGGTGGCAGTACTAGGTTtagcccccccccacctctcattCAGGGTTGATAAAGGTGTTCTCCTCAGTTCTTGCGAACACTTGTAGATTTTAGTCTAAACACTACACTTGACCCAATGGTGCTTCCGAGGTCAGAACAGACTCAAACAACACACGCACAAATCAAGCCTAAGACACACACGTCCAGTAAATCTGAGagtggtgttttaggacacaGCGACGACCCTTCAGTTGGTGTACTCTTCTTCAGTACGGTATGTGGACCTGGCAGTCTGTACGGGACCTTTGGGTTTATTATTATGATATTATTTTGTAACGGAAACGCACAACGGTTATAAGATATTCCAATATTACCTCAGAACGATCGTCTATGGGTCATTTTTTATAAGGAAGGATCAAATGAATGACTAACATCCCAAGCCATTGCTATTGAGCAGTTGGGTGCAGTACTCAGGCAGTTGTTACCTCAACAGATCAGCTGTATGCTGCGTACTCGACTGCCATCTCTTTCCAACcaaacagacaaattatttcagtGGCATCTTTTTACTTGGTATTTTTATATACTTTACATGCTAGactttagaagaaaaaaaacatgtattaaaTCAATGTTTTGTCTGCTCGCTTATGGACGACTATTGTAGAAACCGCAATGGTTTTTGTTGCTTTTATCATGTATTTCTAGGTGGTGCAAGATCTTGTCATATTCAAGCAGAAATGATTTCTTTTCAGAATATGGTTGCTGTTTTGCAAATTCAGTGGATAAAATATCTGATATCTGCCTTTTTCATTTCACGTACTGTAGAAATGATTACTTAACATCTTATCAATTACGCCCCCGTTGTCATTATTATGAATCTATCGTTTAAAGAATGCGAAAGAGATAGAAAGATAATTGGTTTGAAGCACACATAGGATTTATTTTACCTGCATGAGTATTGCATTTGCAATAATGAAATGATCCCATGGTGGCATTAGGTTCGTCTCTATAGATTCATCAGAATGTGTTAAGTATCGTTTATCTGCCCTGTACGATGAAAGAAGCACCGTAACCTTGTCACCTGTACGCTCTGTAGTGTAAACCTTTCTGagagtattacgtttttggggtgCCATTtgagcttttttttatttttaaagaatGTACTTTTCTTTTCATTACAAAATAATCTTCAATAGCAGGGTGGCATggggttacccccccccccccccccccctccacccactTTAAATGACTCCAATAAAATGATTGAAGTACATTGATCTAATATTTTATAATAAACAGTGATGTATTCTAATGAAGTTAGATCTATacacttttaaaaatatatatattctaataGGGGAGCCAAAAGAGAATTTCTCTCTAATCAAGTGGATTATTTATCCGTTTTTAATCAAGTAGTACAATTTATAGTGAGTATGTTTGGCAAAAAATGGAATTATGCCCACCTATTTCCCTTCGAAATGTGTTTACCTGCGGATGGCACATATCAATCAGTCTTACTCCAACCTACCCTATAATGATGTAGGTCTACCACCATTTGTAGTTATGTAATTTACATAACATAATACTTCTGTTTATAAATTTGGCTTTTATCATAACTTTCATTTTCAAAGACTAGTGTTTGTCTGTACTGTTTTGCATTGTATTATTCACTGAATAAACTGAAATGGATATAAATGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2171827 lncRNA upstream 8628 10400123 ~ 10402123 (+) True LOC110503711
TU2171888 lncRNA upstream 31544 10378871 ~ 10379207 (+) True G1898835
TU2171881 lncRNA upstream 43211 10367030 ~ 10367540 (+) True G1898828
TU2171850 lncRNA upstream 110660 10299771 ~ 10300091 (+) True G1898797
TU2171844 lncRNA upstream 128567 10281748 ~ 10282184 (+) True G1898791
TU2171899 lncRNA downstream 1124 10428894 ~ 10429320 (+) True G1898844
TU2171904 lncRNA downstream 1760 10429530 ~ 10430070 (+) True G1898846
TU2171913 lncRNA downstream 18545 10446315 ~ 10446727 (+) True G1898852
TU2171914 lncRNA downstream 19813 10447583 ~ 10447799 (+) True G1898853
TU2171918 lncRNA downstream 24251 10452021 ~ 10452376 (+) True G1898857
XM_021582185.2 mRNA upstream 8629 10395966 ~ 10402122 (+) False LOC110503711
XM_021582184.2 mRNA upstream 14903 10373133 ~ 10395848 (+) False LOC110503709
XM_036961287.1 mRNA upstream 14903 10377539 ~ 10395848 (+) True LOC110503709
XR_005039299.1 mRNA upstream 182043 10205598 ~ 10228708 (+) True LOC118944011
XR_005039298.1 mRNA upstream 194558 10205598 ~ 10216193 (+) False LOC118944011
XM_036962159.1 mRNA downstream 115811 10543581 ~ 10560319 (+) False LOC110503716
XM_036962158.1 mRNA downstream 117599 10545369 ~ 10560319 (+) False LOC110503716
XM_036962157.1 mRNA downstream 117600 10545370 ~ 10560319 (+) False LOC110503716
XM_021582198.2 mRNA downstream 143601 10571371 ~ 10579935 (+) True LOC110503719
LOC110503720 mRNA downstream 154620 10582390 ~ 10594857 (+) False LOC110503720
TU2171824 other upstream 106333 10303182 ~ 10304418 (+) True G1898772
TU2171570 other upstream 561412 9848472 ~ 9849339 (+) True G1898545
TU2171450 other upstream 821060 9588040 ~ 9589691 (+) True G1898441
TU2171293 other upstream 885205 9519932 ~ 9525546 (+) True G1898293
TU2171315 other upstream 966694 9443294 ~ 9444057 (+) True G1898315
TU2171952 other downstream 60083 10487853 ~ 10488334 (+) True G1898883
TU2171964 other downstream 116123 10543893 ~ 10549812 (+) True LOC110503716
TU2172007 other downstream 156345 10584115 ~ 10584449 (+) True G1898930
TU2172082 other downstream 303226 10730996 ~ 10757684 (+) True LOC118944016
TU2174875 other downstream 443888 10871658 ~ 10872906 (+) True G1901545

Expression Profile


XM_036961288.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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XM_036961288.1 Expression in each Bioproject

Bar chart with 21 bars.
XM_036961288.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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