RNA id: XM_021582217.2


Basic Information

Item Value
RNA id XM_021582217.2
length 3420
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC110503731
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10873780 ~ 10877199 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAAAGTTCAGTGTTCTCAAACGATGGATGGAGAGCGGTTGTCTGACGTAGAGTGAAATGTATGTACTGCTGCAAACAGCTGCACGGATTTAGCTTTAAACATGTTTTATTCAAAACTAAGAAGTCCAGGATTAACACGTTCTGTAATGAATGTTATTTGAGCTCACCAGCGTTATTTTCTCATTTCATTGCAAACTTAATTTTCTAGATTGAACTCTGCCGTGCTCGAATTGGCTCGGAGTCTTACCTTCTAAGGACATTTAAACATTTAATACCGTGGAAGcttttttaaaaaatataatagACTAATGTATACCAACTGGAattcattttttataaatttgaccTGCATTTGCGTTGTATAGCAGCAGGAAATGCATTTGTAACAACGGATTTACAACGCTTGTTTTGGGGGCTGTGCTTACAATGGTAAAATAATATGGACATATCCGCATGAATTTACATTTTCGGTCTGAACAAATACAACTTGTTCTTACACTAAACATATGACTGAAAAGAAGCATGGAGGGGTCTCCTTTGAAGATTCTGATTTCTCTCTGGTGTCAGTTGGTGGTTGCTGGCTACAGTGTGGAGCTAGGAACCTACGACCTGGAACGAGGCAGACCAGCCAAATGCGAACCCATAGTAATCCCCATGTGCCAGGGCATTGGCTACAACATGACCAGAATGCCCAATTTTATGGACCATGACAACCAAAAGGAGGCTGCCATCAAGCTGAATGAGTTTGCACCTCTAGTGGAGTATGGCTGTGATGTGCACCTTCGTttcttcctctgctctctctacaCCCCCATGTGCACTGATAAAGTGTCTACCTCCATCCCAGCCTGCAGGCCCATGTGTGAGCAGGCCAGGCAGAAGTGCTCACCCATTATGGAGAAGTTCCACTACGCATGGCCTGACTCGCTGGATTGCTCCAAGCTCCCGACCAGGAATGACCCCAACGCGCTGTGCATGGAGGCTCCAGAGAACGACACCAAGACAGAGATCAAGAAGGGAGAGGGCATGCTTCCTGTTCCCCCTCGGCCAAGGCAACCGGGTAGCGGTAACGGGCGCTCCACTGGCAGTCTGGGGTCCTGCGAGAACCCAGAGAAGTTCCAGTACGTGGAGAAGAGCCAGTCGTGTGCTCCCCGCTGCTCCTCGGCAGTGGACGTGTTCTGGTCCAGAAGGGACAAGGACTTTGCCTTCATCTGGATGACGGTGTGGTCAACGCTCTGTTTCGTCTCCACGTCCTTCACCGTTCTCACCTTCCTCCTGGACCCCCACCGCTTCCAATACCCTGAACGGCCCATCATCTTCCTCTCCATGTGCTACAACATCTACTCTGTGGCCTTCATCATCCGCTCGGTGGCCGGGGCCGAGAACATCGCCTGCGACCGGGAGAATGGCGAGCTCTACATCATCCAGGAGGGGCTGGAGTCCACAGGCTGCACCATCGTCTTCCTCATCCTCTACTACTTCGGTATGGCCTCGTCCATCTGGTGGGTCATACTTACCCTCACCTGGTTCCTGGCCGCTGGTAAGAAGTGGGGCCACGAGGCCATTGAGTCCCACAGCAACTACTTCCACATGGCCGCGTGGGGCATCCCGGCTCTGAAgaccatcatcatcctcaccatGAGGAAGGTAGCAGGGGATGAGCTGACGGGTCTGTGCTACGTGGGCAGCATGGACTCTGGAGCGCTCACCGGCTTTGTGCTCATCCCTCTGTCCTGCTACCTGGTCATTGGCACGTCCTTCGTCCTCACCGGCTTTGTGGCGCTCTTCCACATCCGCAAGGTGATGAAAACCGAAGGCACCAACACGGAGAAGCTGGAGAAGCTGATGGTGAAGATCGGCATCTACTCCATCCTGTACACGGTGCCCGCCACCTGCGTCATCATCTGCTACTTCTACGAGAGGCTCAACATGGACTACTGGAAGTTCAGGGGGCTAGAGGGCAAGTGCGTGTCGTTCCCCGGGCGCCGGAACGAGGACTGCTCCCTGGATGCGTCGGTGCCCACTGTGGCGGTGTTCATGCTGAAGATCTTCATGTCTTTGGTGGTGGGCATCACcagtggtgtgtgggtgtggagcTCCAAGACTCTGCAGACCTGGCAGGGCCTGTGCAGCAGGAAGCTGGCATCAGACAGGACTAGCAGGAAGCCCTGTGGCAGCGTGAGCTGCAGCACACACTGTCATTACAAAGCCCCTGCCGTGGTGCTCCACATGGGCAAGACAGACCCTTACTCAGAAAGCCCCACACATGTCTGACACTGATAGACAATATATTACCAGTATGCAGTTCATTCAATGCTCTGTCTAAACGCATGGAGCTACTGGGATGACATTGTAGTATATGGAATAAGActgagaggaatgagagaagtTAAAATTCAACTGTCAATTGCTGCTTTTCTGTGCACAGGGAGAAAGCACAGGCTACAGTATGGAAGTAGACACAGCTTTCCTTATTTCAGTATTGATGCATTTCAGTATTGCTCTCTATAGACACACAAGATGTGTGGACTGTATTACACAGAGATGCTCGACTGCAATGCAGAAAAGGACTTGCATGGACATTTTAAAGGAGAGACATTGTTCTCCCCTGAACTGGGTATAAATAACTTCATAAATATGTTTAAATGTTAAACAGTCTATttattgtatatatatttaattgaAGTTTACTTTGGTTTCTCACAAGTTTGATTGGAGTGAACATGCATCTATTAGGCTAAAGATTAAACTCTTGAGAATCAAGGAAAATAAAGTGCCTCTTATCAAGTTCTTACGAATAATAACATGTGGTATACATTTTCAACCGGTCTTTTAATTGTATGTTCTTGGTCATGGTTTATTTACTATTATTAAGTTCAGTGTGAATCCTATATATGTTTCAATATGGCGTCGCTTCATTATATTGATTGAGGAAATTATATTTAGTGGAGACTTGAGAGGAAAATCCATTGCAAAACATATTGCATCTTACGTTCTCTTTGATAATAATTTGGttctataataaatcaataaaaacattTCTCACAAAAGGAGAACTTGGTTAGATTACCTATGGCTATAGATATTCATGATTCGTTCATTTCATTAACCCAGGACGACCACAATAAATCAGATGTGCTAGACTGTAGTAGGGTTTATTCTCTTTTGGGTGAAGTAGACTGTAGTAGGGTTCATTCTCTTTTGGGTGAAGTAGACTGTAGTAGGGTTCATTCTCTTTTGGGTGAAGTAGACTGTAGTAGGGTTCATTCTCTTTTGGGTGAAGTAGACTGTAGTCGGGTTCATTCTTTTGCAAATTAAAGGTGGCCTGTTTCCTATGGTAATGCCAACATGAAAAAATGAACTGTAAACCTTTGGAGCACATACAATATAAGAATAAATACAACCGTTTATATTCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2175120 lncRNA downstream 2258 10870977 ~ 10871522 (-) True G1901752
TU2174861 lncRNA downstream 20248 10852598 ~ 10853532 (-) True G1901532
TU2174823 lncRNA downstream 52388 10821013 ~ 10821392 (-) True G1901501
TU2174814 lncRNA downstream 61709 10811416 ~ 10812071 (-) True G1901492
TU2174765 lncRNA downstream 152555 10720899 ~ 10721225 (-) True G1901448
TU2175131 lncRNA upstream 14449 10891648 ~ 10891902 (-) True G1901763
TU2175132 lncRNA upstream 14794 10891993 ~ 10892332 (-) True G1901764
TU2175180 lncRNA upstream 93944 10971143 ~ 10971351 (-) True G1901811
TU2175177 lncRNA upstream 106725 10983924 ~ 10986794 (-) True LOC110503738
TU2175196 lncRNA upstream 141821 11019020 ~ 11019391 (-) True G1901827
XM_036961237.1 mRNA downstream 64376 10765892 ~ 10809404 (-) False LOC110503728
XR_005039311.1 mRNA downstream 64376 10765892 ~ 10809404 (-) True LOC110503728
XM_036961238.1 mRNA downstream 70703 10765892 ~ 10803077 (-) False LOC110503728
XM_036961239.1 mRNA downstream 143369 10726288 ~ 10730411 (-) True LOC110503726
XM_021582212.2 mRNA downstream 143896 10726288 ~ 10729884 (-) False LOC110503726
XM_021582218.2 mRNA upstream 28130 10905329 ~ 10912872 (-) True LOC110503733
XM_021582219.2 mRNA upstream 38272 10915471 ~ 10917882 (-) False LOC110503734
NM_001124673.1 mRNA upstream 94892 10972091 ~ 10982118 (-) True shbgb
XM_021582223.2 mRNA upstream 109211 10986410 ~ 11027878 (-) False LOC110503738
XM_021582224.2 mRNA upstream 116164 10993363 ~ 11027881 (-) False LOC110503738
TU2174839 other downstream 17343 10853831 ~ 10856437 (-) True G1901516
TU2174716 other downstream 256299 10616924 ~ 10617481 (-) True G1901405
TU2174598 other downstream 473923 10399042 ~ 10399857 (-) True G1901302
TU2174494 other downstream 667832 10205220 ~ 10205948 (-) True G1901206
TU2174330 other downstream 861426 10005372 ~ 10012354 (-) True G1901072
TU2175108 other upstream 38355 10915554 ~ 10917934 (-) False LOC110503734
TU2175112 other upstream 38926 10916125 ~ 10917934 (-) False LOC110503734
TU2175110 other upstream 38995 10916194 ~ 10917934 (-) False LOC110503734
TU2175109 other upstream 39184 10916383 ~ 10917934 (-) False LOC110503734
TU2175111 other upstream 39222 10916421 ~ 10918092 (-) False LOC110503734

Expression Profile