RNA id: NM_001124673.1


Basic Information

Item Value
RNA id NM_001124673.1
length 1709
RNA type mRNA
GC content 0.52
exon number 8
gene id shbgb
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10972091 ~ 10982118 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGGACCTGACAAGTATAGAACATAAACGCCATAAGGAACGTCTGGTTAAGAGAAGCAAGCACCCCAAAGGACCGTGAAAAGAAGTAGACCTTAGTAGATCATGTTTGCATTGAAGAGGTTTGTGGTGGCTCTGCTGACCCTGGGGATTTGGGTTCATCCAACGCTTGAACGGACACTGGAGCCATCACCAGAATGCTACTATTTTGTCGAGTCCAGGTCCTCACATCTCCTGTACACTGGGAACAGCTCTGTGGGGAATGTCCCCATTCTGGAGTACAAGGTCACAGAGTTGACCAGCTTTGACTCTGAGTTTGAGCTGCGTACTCTGGACCCTGAGGGGGTGATATTCTTTGGGGACATCGGCGGGCAGCAGAACTACTTCCTGCTTGCTGTGATCCAAGGGAACCTGAGCGTCCAGACGAGCTGCGGGGATGGACAGGTCCTCGTCACCTCCGGGCCCAAGATCAGTGACGGGGAGTGGAAGAAGATTGCAGTGATGAAACATGAGGGAGCTGTGGCTGTACGCGTTGGCTCGGAGACAGCCGTCACAGTGCAGCAGTCTGCTGAGAGCCAGAGGGCCGAGATAGGCAACGGCATGCTGAGAATCTCTATCGGAGGCCTGCTCCCAGATAGCGGAGTTACCTTGGGGcTGAACCCTCCTCTGGATGGCTGCATGCGGAGCTGGGACTGGGTCAGACAGGACTCCAGCATCCTAGAGCGGACCCTGCAGGATTCCAAGGTGCAGAGGTGCTGGGAACATATTGCCCCCGGGTCCTACTTTACTGGAGTCGGCTCTGTTGGTTTCAGCTCTCTAGCCTTGCTGGGAAACTCTTCAGCTGAGCTAGATGGTGCAGACTGGACACTCTCTGTGGAGCTAGCTCTCAGAACGGTTTCAGCCAGAGGCTTTCTCTTTATTCTGCTAGACACTCAGAACGACTACATCCTCTCCTTGAAACTCAACCACCCTTCACAGGAACTGATGCTACGTTTGAGGGGGACTCTATTCTGGTCGCGCAGCTACCCCCAGACCCTCTGCTCAGGTGAGAGTCAGTTCCTGCAGCTGCAGGTGAGGCCAGGCCAGCTGGTGATTGGCATGGGCATAACCAAGGCAACCATGAGGTTGACGGATGGGGACTACGAGCTCCTGAAGAGGGTGTTGAGCCAACCAGGGAGCAGGGTGTACCTGGGGGGCGGGCCAGCGGGTCTGTCCAGCTTCCACGGCTGTCTCCAGGCCAAGATCCAGGGTGTCAACGTTGACCTTGACCTGGCAGAGGTCAAACACGGGGATGTCCGCTCTCACAGCTGCCCTGCCGCCCTCGACATCAGAGATGGGAAGTAAAGGAGCCGCAGTTACACCCGACACTGCTTATAAGACTACACAAGGCTACACTGTTTTCTGTTTGGCTATTGTCTGTCTCTCAACATTTTACTGTCTCATGTGGCTATCTATGTAACAAGATGTGACACAGTACTGCAGAATGCAGTAACATTGTGTTTGTATTGAAGCATCTCTGACATGTGGGGGATGTTCATTTGAAGAACAAGAGAAGGATTGCGTTTTCTTTGGGTAGATTGTTTTGCAAACTTGGTAGTTACTGCAAAACCGTAACATGGCCTCTTTCACTTTATTTGCAGTACAGCTGAATTACCATGTCCACTCTTGTTAAGTCTGTGTGAATGGCAATAAAGCATTTGCTGCTTTTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2175180 lncRNA downstream 740 10971143 ~ 10971351 (-) True G1901811
TU2175132 lncRNA downstream 79759 10891993 ~ 10892332 (-) True G1901764
TU2175131 lncRNA downstream 80189 10891648 ~ 10891902 (-) True G1901763
TU2175118 lncRNA downstream 97855 10873804 ~ 10874236 (-) True LOC110503731
TU2175120 lncRNA downstream 100569 10870977 ~ 10871522 (-) True G1901752
TU2175177 lncRNA upstream 1806 10983924 ~ 10986794 (-) True LOC110503738
TU2175196 lncRNA upstream 36902 11019020 ~ 11019391 (-) True G1901827
TU2175205 lncRNA upstream 47408 11029526 ~ 11029754 (-) True G1901836
TU2175212 lncRNA upstream 49327 11031445 ~ 11032378 (-) True G1901838
TU2175247 lncRNA upstream 122569 11104687 ~ 11106086 (-) True G1901870
XM_021582219.2 mRNA downstream 54209 10915471 ~ 10917882 (-) False LOC110503734
XM_021582218.2 mRNA downstream 59219 10905329 ~ 10912872 (-) True LOC110503733
XM_021582217.2 mRNA downstream 94892 10873780 ~ 10877199 (-) False LOC110503731
XM_036961237.1 mRNA downstream 162687 10765892 ~ 10809404 (-) False LOC110503728
XR_005039311.1 mRNA downstream 162687 10765892 ~ 10809404 (-) True LOC110503728
XM_021582223.2 mRNA upstream 4292 10986410 ~ 11027878 (-) False LOC110503738
XM_021582224.2 mRNA upstream 11245 10993363 ~ 11027881 (-) False LOC110503738
XM_021582222.2 mRNA upstream 51901 11034019 ~ 11044550 (-) False LOC110503737
XM_021582221.2 mRNA upstream 51901 11034019 ~ 11045548 (-) False LOC110503737
XM_036961236.1 mRNA upstream 51901 11034019 ~ 11045548 (-) True LOC110503737
TU2175111 other downstream 53999 10916421 ~ 10918092 (-) False LOC110503734
TU2175108 other downstream 54157 10915554 ~ 10917934 (-) False LOC110503734
TU2175112 other downstream 54157 10916125 ~ 10917934 (-) False LOC110503734
TU2175110 other downstream 54157 10916194 ~ 10917934 (-) False LOC110503734
TU2175109 other downstream 54157 10916383 ~ 10917934 (-) False LOC110503734
TU2175312 other upstream 208557 11190675 ~ 11192759 (-) True G1901922
TU2175605 other upstream 471286 11453404 ~ 11455158 (-) False LOC110503748
TU2175607 other upstream 471286 11453404 ~ 11461047 (-) True LOC110503748
TU2176372 other upstream 985724 11967842 ~ 12052648 (-) True G1902875
TU2176356 other upstream 997693 11979811 ~ 11980462 (-) True LOC110503324

Expression Profile