RNA id: XM_021582223.2


Basic Information

Item Value
RNA id XM_021582223.2
length 4641
RNA type mRNA
GC content 0.48
exon number 24
gene id LOC110503738
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10983924 ~ 11027881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTCACACAAGTCTCTCCAGTCTCGTCTAATGTCAGCATACGGCCAATAGCGCTCGTAGTGACGCTGCAGTAGGTTGGCCCTTCGCTTGCATTCATAAACGGATATGATAGCTAAGCGTTGAATGTACTACTGTAGCGACATATACACAGTCAAGTCGGACCATGGCGGAAGAAGACGACACGAGAATTCGGATTTTACAAAGCCTGCGGGGAAAGATATGTGAAGGCAAGAACCTGGGTCCCTGTTCAGGGCCCAACCGACAGCGGGACCTCTGCACCTTCTGCACCATCAGCCTGGACCAGGAGGAGGTGTTCCGGACCAAGGTGTTTGACAAGAGCCTCAGCCCTTTCTACGGCGAGGACTTCTACTTTGAGATCCCACGACCATTTCAGTGTTTGTCCTTCTACGTATTCGCCAAGGGTGTTTTTCAAAGGGACCTGCCTGTCGGGAAAGTGTCCATCCGGAAGGAGGAACTGTGTAAATTCAGTGGGAAGGAGCACTGGTTTGGCCTGCAGCCCGTGGACCCTAACTCTGAAGTCCAGGGAAAGGTCCACCTGGAGATGCGTCTGAATGAACTGATCATAGAGAACGGCTCCATGTGCCAGCAGCTACTGGTCCGGATAATAGAATGCCAGGGCTTGCCTCTGATCAGTGGACAGAACTGTGACCCGTATGCCACTGTCTCGCTCGTTGGGCCTGCCAGGTTTGACCAGAAGAAAACAAAGGTGAAAAAGAAGACCAGTGACCCTCAGTTTGAGGAAACATTTTACTTTGAGGTCACAAGGCCCAACAGTTACACAAAAAAGTCTCATTTCCAAGTAGAGGAGGAAGACATTGAAAAGCTGGAGATCAAAGTTGACTTGTGGAACAATGGGAATTTGGCGCAGGATGTTTTCCTTGGGGAGACGCGGGTATCTGTCAAGATTCTACGAAATGACCACATTCACAGGGCCTGGTATCTCCTCCAGCCCAAAGGGAACGGGAAGTCCAAGACAGATGACCTGGGCTCTCTGAGGCTCAACGTAACCTACACAGAAGACAATGTGCTGCCATCCGCCTGCTACACACCGCTCCGCACGCTGCTGCTCAAGTCCCCAGACATTAAGCCCATCTCGGCGTCAGCGGCCCACATTCTGGGGGACATCTGCAGGGAGAGGTATGAGGCGGTGTTGCCTGTGGTCCGCCTGCTACTCCACCACAGCCGCCTGGTGTCCTTCGTCTCCGCCATCGCtgccctggagctggagaacACTCAGGAGGCCAACACCATTTTCCGTGGCAACTCCCTGGCAACGCGCTGCATCGACGACATGATGAAGATTGTAGGGCGGAGCTACTTGACGGTCACCCTGAAGCCTGTACTGGATGAGATTTGTGAATCAAACAAAACCTGTGAGATTGACCCGATCAAACTGAAAGAGGGAGATAACGTTGAGGTCAACAAGGAGAACCTGCAGGGGTACGTTCAGAAGGTGTTCTCGTCCATCACCCAATCCAGCTCCAGCTGTCCCCCGCTCATGTGTGACGTGTTCCGCTCGCTGCGTCAACTGGCCTCCAAGCGATTCCCAGaTGATCCTCATGTCCAGTATTCGGCGGTCAGCAGCTTCGTGTTCCTACGCTTCTTTGCCGTCGCCGTTCTCTCGCCACACACCTTCCAGCTCCGCCCACACCATCCTGACCTAGAGGTCTCCCGAACACTCACTCTAATCTCCAAGACCATCCAGACTCTGGGGAGCTGGGGTAGCCTGTCCAAAAACAAACTGTCTAGTTTTAAAGAATCCTACATGTACGATTTCTTCAAATCATTCCAAGAAGACAAATGTATTGGAAAAGTAAAAAAGTTCCTAGACGAGATCTCTTCCAACATCAGTAAGGAGTCCAGCGGGGTGGAGGATTCTGTGGTTCTCAAAGAGGGGGAGGTACAGAAGCGGGCCCAGGGAAGGAAACGCATCGGCAAGAACTTTAAGAAGAGGTGGCTTAGAGTGACCAGCAGGGAGCTCTCCTACCACAAGCACAGAGGGAAAGAAGCACTCTGCATTATGCCTGTGAAGAATATCCAGGCTGTGGAGAAACTGGACGAAAGTGCCTTTAACCGCAAAAATATGTTCCAGGTGCTCCACAGTGAGAAGCCGCTGTACGTGCAGGCGGGGAACTGCGTGGAGGCCAGTGAGTGGGTGGAGGTGCTGAGCCAAGTGAGCCGCTGTAACCCGGACCGCCTGGGCACCTTCCACCCCTCGGCCTACTTGGCCGGAGCCTGGCTCTGCTGCAGGAGCCTGAGCGACAGCCAGCCGGGCTGCAAACCCTGCACACCTACCTTGCTGGCTAACCTACAGCTGGATATCGACTGTGACCGCGAGACGGAGAGAATCTTCTCCCTCTTCACCTCCAGCTACTCCAAACTACAGAAGATGGAAGATGCGTGTGCCAGCATCGCTGTGTACCAGGGTCCTCTGAGGGAGCAGGACgactactccctgttcaccatcCAGGACTCCAAGGAGACATTCCACACAGTGCGGCAGATCTCACACATCCTGAAGGAGCTGCAGAGAGAGCACGACACCCGCAGCGGCACCGCGCAGTACGGCAGCCAAGAGAATCCGATAGTTGGGAAGACATCCTAACGAGTCTAGGTGGGTCTGTCTGGCCTGAGACAGTCATTCCAGAAAATGGCAGTATGCCACCTGCCACAGTTCTACACTGGAGCCCCAGAGTGACACAGTCGGGATTGGCACTGAGAACGATGCCCGAGGACCAAGAACCCACACCCCCAAGGTCGCGCTCTGCCCCCGCTTCCCCCTCCACCACGTGTGACTGGACGGACGGTCCAATAGCGAAGTGTCACCTGAACCTGGTCAGAAGCTCTCATTGGTTCAGAAGAGGAGAACCTTGGTTGAGTTTTATTCTCTAGCTCTCCCCGTCTGTttctatccttctctctttctcacacaccaCTGTTCTAATCAGAGGAATATGTGCTTGCTCTCGTCTTCTACTTGATTTGCACAAAGACCATACAACATCATTagttggggtgtgtttgtgtgtgtgaataggctGCTAAAATACTCCATTTTATTCACTCAAATGTTTTCAATCTCGATCGTCAACAATCAAGATGATGCTCTCACAATCTCTTGGGGCTTCACTGTTTGACGTCCGTTTACGACTAAACAGCAAGCTGACTTTGTTTCTCATTTTCTATCAAAGGGTCCACTTAACTgtactctcttcttcctcctctatcCACCTCTGTGCTTTGAACAAATGTAGGTGTTTCAGATTACAGTTAAGTGGATGAAACCCATCTGCCTTATTTTTCTTAATGGATGTATGTGTAACAATCTCTCGCATCCTCGAGTTAGGGACTAATGCCCAAGCACTTTACATATTTGGAATATTCCAGATGGCATCATTTTAGATACGTGGTATCATTATACCCCCCATATCGATCAGTTCAATGATCTCGAGTACCTTCTCCTTTCCATTCCTGTACAATAACATTTATAGCCTGTAGATTTTAATAGCTAATTTTCTTACACCAAAGACGACTATCGTAAGGTCGACTTGGAAAAAAAGGGTATAAATGTATTTTGAATAGACTTTTTTTAAATGGagagaaatacagtatatatttcgTTCATGTGCATTTTGGTAACTGCATTGTTCCTCTTTTTAACGATTTAGACGATTTGATTGAGTAACTTTCTAATGTTCTCTGGAAATGCAGAGGGACTGTGGTCGGTAGTCTAGAAATGTCTGTCAACCATGTAGTGATGTCACTGCAAATCAATCACAACAAGCTAGACAATCCCCCTTCACTTGCCAATCTAGCCCCTTAGATCCTCATCACTGGCCCACATTAACTGGTAGTCAAATGTGATTGGATAGATCTACAATCAGGCAAACACACATATATTAGTTAGACCCCATtcattgttttgtgtgttttagaCTGAGGACAATTGCTGTGTTCATAgccaagtgggaaggtggtaatTGCCCGTTTTGAAGTCGTAAATACCGGTTGGATGCATTCACGTGCTTTGAACTAGTTGAgaaacgctgattggctaatgtGCAACAAGTTGCGTCAACCTTAAAATAAAAGTACAGCTGtcatgcttgtaaacaaatgATAGTGTTCAAAAAAACATAtaaattgatttatttttataaataatgttttattaCATTTAACTGCCAAAAACGCAGTTAAGGTAATTTCCTTAGTAGGTGAcagaggtcagcatgtgggagaagtcTGAGCTCAGGGATGATAGATGAGCTTCCCAatagtatactgaacaaaaacataaacgcaacacTTTCAAAGattctactgagttacagttcatatgaggaaatcagtcaatttaaataaattcattaggccctaatctatggatttcacatgactaggaatacagatatgcatctgttggtcacagatacctttttaaaaaaaagagtTGTGTGTTGATTAGAACCaatcagtgtctggtgtgaccaacatttgccttgtgcatctcctttgcatagttgttcaggctgttgattgtagcctgtggaaccataaccccactgccaccatgtgtcacacgttgacatcagtaaaccgctcactcacacaatgcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2175180 lncRNA downstream 15059 10971143 ~ 10971351 (-) True G1901811
TU2175132 lncRNA downstream 94078 10891993 ~ 10892332 (-) True G1901764
TU2175131 lncRNA downstream 94508 10891648 ~ 10891902 (-) True G1901763
TU2175118 lncRNA downstream 112174 10873804 ~ 10874236 (-) True LOC110503731
TU2175120 lncRNA downstream 114888 10870977 ~ 10871522 (-) True G1901752
TU2175205 lncRNA upstream 1648 11029526 ~ 11029754 (-) True G1901836
TU2175212 lncRNA upstream 3567 11031445 ~ 11032378 (-) True G1901838
TU2175247 lncRNA upstream 76809 11104687 ~ 11106086 (-) True G1901870
TU2175249 lncRNA upstream 80160 11108038 ~ 11108260 (-) True G1901872
TU2175250 lncRNA upstream 80843 11108721 ~ 11109033 (-) True G1901873
NM_001124673.1 mRNA downstream 4292 10972091 ~ 10982118 (-) True shbgb
XM_021582219.2 mRNA downstream 68528 10915471 ~ 10917882 (-) False LOC110503734
XM_021582218.2 mRNA downstream 73538 10905329 ~ 10912872 (-) True LOC110503733
XM_021582217.2 mRNA downstream 109211 10873780 ~ 10877199 (-) False LOC110503731
XM_036961237.1 mRNA downstream 177006 10765892 ~ 10809404 (-) False LOC110503728
XM_021582222.2 mRNA upstream 6141 11034019 ~ 11044550 (-) False LOC110503737
XM_021582221.2 mRNA upstream 6141 11034019 ~ 11045548 (-) False LOC110503737
XM_036961236.1 mRNA upstream 6141 11034019 ~ 11045548 (-) True LOC110503737
XM_021582225.2 mRNA upstream 18745 11046623 ~ 11047857 (-) True fbxo36a
XM_036961327.1 mRNA upstream 385969 11413847 ~ 11428871 (-) False daw1
TU2175111 other downstream 68318 10916421 ~ 10918092 (-) False LOC110503734
TU2175108 other downstream 68476 10915554 ~ 10917934 (-) False LOC110503734
TU2175312 other upstream 162797 11190675 ~ 11192759 (-) True G1901922
TU2175605 other upstream 425526 11453404 ~ 11455158 (-) False LOC110503748
TU2175607 other upstream 425526 11453404 ~ 11461047 (-) True LOC110503748
TU2176372 other upstream 939964 11967842 ~ 12052648 (-) True G1902875
TU2176356 other upstream 951933 11979811 ~ 11980462 (-) True LOC110503324

Expression Profile