RNA id: TCONS_00057554


Basic Information

Item Value
RNA id TCONS_00057554
length 677
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id XLOC_027024
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4231636 ~ 4233420 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGCTCCCATGACCCGTCACTACGACAACCTCACATAAACAATAGCACAACAAAAGAGACACAGGCAGGACAGCGGAAGCACCATCCTGCCGCTCTTTTTCTTACAGACACATGTTTCCCAGCGTGCATTCAACTGATGTGTGAGAAGAAGGCACTAATAATGCCTTCAGGAAAAAAGTCCAGATCTCAAAGTGCCAGAGCTGCCAGCAAGAGCAAAAGAAAGCGCTCCTCCAAGAAGAGATCTGTCAGTGCCAAAGCCTCAAAGACAGATGTGGATATTTTGAGTCCAGCAGCCATGGAGAACGTTTACTACATCTCCCATAATGCTGTGGACTGTCTGGAGTTCAGAGGATTCGGCTGGCCTGGAGCCACCAAGAAGAAagggaaaaaaggaaagaaaagcaAGAAATGATTATTTGTGCCAGGTTCATCCTACATGTTGgctatttattatatatacacatatagggTGCTAGTTTCTATTTTTgactagattattttgcttatacccCATCGGCTGATTATCTTGctcgttttaaggaaaaactcggtTTAGTTTGAcgtatttctgaaaacaagacaatattaatttgcttgtctaaaaatgtttcttgatttgaaaaaaaaaaaaataataataataaagatcgTGCCAGGTTAACCTTATATGTTTGCT

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057125 lncRNA upstream 8960 4222434 ~ 4223533 (+) True XLOC_027023
TCONS_00057123 lncRNA upstream 25576 4170661 ~ 4206917 (+) False XLOC_027022
TCONS_00057122 lncRNA upstream 41672 4170661 ~ 4190821 (+) False XLOC_027022
TCONS_00053289 lncRNA downstream 39870 4273203 ~ 4300118 (+) True XLOC_027025
TCONS_00057555 lncRNA downstream 156576 4389909 ~ 4398440 (+) True XLOC_027027
TCONS_00057556 lncRNA downstream 249424 4482757 ~ 4485988 (+) False XLOC_027028
TCONS_00057557 lncRNA downstream 249643 4482976 ~ 4485988 (+) True XLOC_027028
TCONS_00053292 lncRNA downstream 351768 4585101 ~ 4585884 (+) True XLOC_027030
TCONS_00053284 mRNA upstream 120726 4079418 ~ 4111767 (+) True XLOC_027019
TCONS_00053283 mRNA upstream 234003 3980247 ~ 3998490 (+) True XLOC_027016
TCONS_00053282 mRNA upstream 487400 3482312 ~ 3745093 (+) True XLOC_027012
TCONS_00053281 mRNA upstream 749699 3478049 ~ 3482794 (+) False XLOC_027012
TCONS_00053280 mRNA upstream 757114 3455665 ~ 3475379 (+) True XLOC_027011
TCONS_00053287 mRNA downstream 34118 4267451 ~ 4356831 (+) False XLOC_027025
TCONS_00053288 mRNA downstream 39289 4272622 ~ 4358940 (+) False XLOC_027025
TCONS_00053291 mRNA downstream 276663 4509996 ~ 4524284 (+) True XLOC_027029
TCONS_00053294 mRNA downstream 570365 4803698 ~ 4832149 (+) False XLOC_027033
TCONS_00053295 mRNA downstream 583362 4816695 ~ 4823728 (+) True XLOC_027033
TCONS_00053267 other upstream 1650462 2581916 ~ 2582031 (+) True XLOC_026997
TCONS_00053256 other upstream 2257599 1958240 ~ 1974894 (+) False XLOC_026987
TCONS_00053257 other upstream 2258285 1967756 ~ 1974208 (+) True XLOC_026987
TCONS_00053255 other upstream 2280997 1950849 ~ 1951496 (+) False XLOC_026987
TCONS_00053254 other upstream 2290338 1937920 ~ 1942155 (+) False XLOC_026986
TCONS_00053290 other downstream 143165 4376498 ~ 4387008 (+) True XLOC_027026
TCONS_00053293 other downstream 457393 4690726 ~ 4690841 (+) True XLOC_027031
TCONS_00053296 other downstream 600752 4834085 ~ 4888504 (+) False XLOC_027034
TCONS_00053314 other downstream 1021745 5255078 ~ 5273838 (+) True XLOC_027045
TCONS_00053330 other downstream 1169782 5403115 ~ 5416987 (+) False XLOC_027051

Expression Profile

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