RNA id: XM_036961054.1


Basic Information

Item Value
RNA id XM_036961054.1
length 2713
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC110503748
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 11453367 ~ 11478299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCACATGAAATGATAAGCGTCAATCCGTTGGTGGCGCTGGTAAACCCATGGAAATCAGGAGCGTGCAGTGCGTGACTCTCCTCTCTTGACTTACAACGCCTCCTGTTCAGCCGACAGTCACAGTAGCCACTCTTCCTTTCAGAGTAGGTACCCGTTTAGCAGCAAAAGCTTTTCCCGTTACCTGCAATTCCCCATCCTTCCCTGGTTTTGTTTCCTTCCCCTATTTGTCACAGTCATGGCGGCGAGTGCGAAAAGAAAGCAGGAGGAGAAACACCTGAAGATGCTGAGAGAAATGACGAGTTTGCCTCCTAACAGAAAGTGCTTTGACTGCGATCAGCGCGGCCCAACCTATGCCAACATGACGGTGGGGTCTTTCGTCTGCACCTCCTGCTCTGGCATACTGCGAGGGCTGAACCCACCCCACAGAGTGAAGTCCATCTCCATGACGACCTTCACGCAACAGGAAATCGAGTTTCTCCAGAAACACGGCAATGAGTCATGCAAACAGATATGGCTGGGGCTTTACGACGACAGAACCACCTCCATACCGGACTTCAGGGAACCCCAGAAAGTCAAGGAGTTCCTTCAGGAGAAATACGAGAAGAAGAGATGGTTTGTTCCCCCGGAGCAGGCCAAAGTGGTGGCTTCTGTCCACGCCTCCATCTCCGGCTCGTCagccagcagcaccagcagcaccccCGAGGTCCGACCCCTCAAAACACTGCTGGGCGAGTCGGCCCCCACCTTGCACCTCAACAAGCACACGCCCAGTCAATCTCCGGTGGGGAGCCGTGTGGCCCAGGCCCTCCAGCTGAGCCAGCAGCAGCAGTTCCACGACAAGAAGTTTGACCTCCTCAGCGACCTGGGCGGCGACATCTTCGCCGCGCCGCCCCACTCTCAGACTGCAGCAGGCTCGGCGGCCAACTTTGCCAACTTTGCACATTTCAACAGTCAGCCAGCTGCTCAGAACGCAAATGCAGACTTTGCTAACTTTGATGCGTTTGGGAGCGCGGGTCCACCGGGTGCTTTCCCCTCGGCACCCCAAGCCCCCTTCCAGacctcacatacagGAGGTAGTGTCCCGAGCGGGGTTCCAGGCTCTCTCCCCCCGGGGGCGTCGGCAGTACTGCGTCACCCCCAGAGTCAGCTGACGGGTACGTCGGCGGCAGACCGCTACGCCGCGCTGGCCGAGCTGGACAACGTGTTTGGCTCGTCGGCCCCCGCCACCAGCGTCTACAACACCGTTAGCACTTCACAAGGGGGGATGTTTGGCCCTGTGACAGGAGTCTCGTCAGCCCAGGCACAGCAATGCATGTCCAGCATGCCCCAGGGTTTTGGAGGTCTGTCAACAAACCCTTTTGCTGTTGCAGCCGTTGCCCCGGCGACAGCCCCCACCAACCCCTTCCAGAGCAACGGGAGAGCAGCGGCCGTGGCGGCAGCAGCCACGTTTGGCACAGGGTCCATGAGCATGCCAGCCGGATTCAGGACCGCTGCTACCTACAACCTCCCCACCAGCTTCAGTGGGACCTTCCAACCTCCTTTCCCTGGCCAGGCCCCCTTCCCCCAGCCTCCGGCCTATCCCCAGCAACCcaacgGAGTGGGGTTTTCAGCCTATGGACAGGCCAAGGCTGTGGTAACTCCCTTTGGACAGGCGATGGCCGCACCCGGGGTCTCTAGTAACCCCTTCTTGGCGGGCGCCTCTTCAGGACACTACCCCTCAGGAAGCTCTTCAACAAATCCTTTCTTATAGTGCTGCTCCACCCAAACTTCCACCACTAGGGTGTTGTCAACTGGCGTGCTCCGCTCTCACCTCTTGCACTGTTTTGTTTTACAAGACGCTTTAAAAAGACAAACACTGTTTCTAAAACTGgtattttgtattatgttttaagAACAATGATAACAACAAAGTGACGTAACTGACACCATCCATGGCAACAAGAATCAAAACAAGGTAAAGGTGTGTGGATGGAGGGGTTGTTaggggcggcaggaagcctagcggttaagagcgttggggcagtaaccaaaatgttgctgAATCGGtggaaaatctgtcgatgtgcccttgagcaaggcacttaaccctagttgctcctcctgtaagttgctctgggtaagagtgtatgctaaatgacttaaatgtaAATGTGTTAAAGGGACAGGGTCTCATCCTCTATCTAACCTGTGAACTGGCCCGGACTCAGCTGAGGCATATGTATATTCAAACTGGCTGATACTAAGTTATTGCAAAATATTCCCATTCATTACACTGgaattttgtaaatatttttttcttagtGGAAATTAGCTCTGTGCATATCCGTATTTGTACATTTAACACAAGTTTAAGGGCAGAAATGTTATTTGGAAAAGCTGAGAAGACTGCTTTGAGTTGCTTTATTTGTAAAGAGTAACCAAAAGGGGATTGTGCAGCGTGATATCGGTAGGACTATTTTtacagagaaaaagaggagaacaTGCATTTCATCATTTATTACAGCAGAGGGGGAGGAGTCTCTCCTCTTCTGTGATTGGCCCCAAGGGCTGAGGCTCCACCTGGAAGGGAATTGGCTCTCACCTATGCTCTGACCTGTCCAGGTGGTTTACCACAATATAGACTGAAGACCACTGACTTTGGGTGTTAAAGAGATTtaagttaatgtgtgtgtgtgtatatatatatatattaaaatgaaTTTTAACTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2175590 lncRNA downstream 22997 11430134 ~ 11430370 (-) True G1902181
TU2175493 lncRNA downstream 180863 11272211 ~ 11272504 (-) True G1902093
TU2175340 lncRNA downstream 212219 11240834 ~ 11241148 (-) True G1901948
TU2175318 lncRNA downstream 246188 11195568 ~ 11207179 (-) True G1901927
TU2175315 lncRNA downstream 259789 11193175 ~ 11193578 (-) True G1901925
TU2175817 lncRNA upstream 38566 11516849 ~ 11517056 (-) True G1902380
TU2175831 lncRNA upstream 62583 11540866 ~ 11541201 (-) True G1902394
TU2175847 lncRNA upstream 72360 11550643 ~ 11551029 (-) True G1902404
TU2175849 lncRNA upstream 82045 11560328 ~ 11560638 (-) True G1902406
TU2175858 lncRNA upstream 92657 11570940 ~ 11571180 (-) True G1902415
XM_036961328.1 mRNA downstream 24494 11413847 ~ 11428873 (-) True daw1
XM_036961327.1 mRNA downstream 24496 11413847 ~ 11428871 (-) False daw1
XM_021582225.2 mRNA downstream 405510 11046623 ~ 11047857 (-) True fbxo36a
XM_021582221.2 mRNA downstream 407819 11034019 ~ 11045548 (-) False LOC110503737
XM_036961236.1 mRNA downstream 407819 11034019 ~ 11045548 (-) True LOC110503737
XM_021582253.2 mRNA upstream 1894 11480177 ~ 11482937 (-) True LOC110503749
XM_036961759.1 mRNA upstream 5143 11483426 ~ 11488824 (-) False LOC110503750
XM_036961758.1 mRNA upstream 5143 11483426 ~ 11488825 (-) False LOC110503750
XM_021582254.2 mRNA upstream 5143 11483426 ~ 11488826 (-) True LOC110503750
XM_036961619.1 mRNA upstream 116911 11595194 ~ 11814540 (-) False LOC110503751
TU2175312 other downstream 260608 11190675 ~ 11192759 (-) True G1901922
TU2175111 other downstream 535275 10916421 ~ 10918092 (-) False LOC110503734
TU2175110 other downstream 535433 10916194 ~ 10917934 (-) False LOC110503734
TU2176372 other upstream 489559 11967842 ~ 12052648 (-) True G1902875
TU2176356 other upstream 501528 11979811 ~ 11980462 (-) True LOC110503324
TU2177124 other upstream 1239167 12717450 ~ 12723997 (-) False LOC110503775
TU2177125 other upstream 1239167 12717450 ~ 12718779 (-) True LOC110503775
TU2178084 other upstream 2238367 13716650 ~ 13719451 (-) True rabx5

Expression Profile