RNA id: XM_036961624.1


Basic Information

Item Value
RNA id XM_036961624.1
length 4423
RNA type mRNA
GC content 0.58
exon number 16
gene id LOC110503751
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 11595194 ~ 11814542 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaggggagaggaggagggattcATTCATTTCCTAGTGTTCGCTGTGATGGTCAAAACACAATTAAAACTTATAAAACATTTAATGAAAACGTTTCACATTAGTAATTTAGCCGAACATTGATGAATGTGATTTCATTTTAACACAAAAGGTAGGCATGCATGGTGAGAGTTTGAGAATAGTTCATTATAATTAATGTCTCCGGCTCTCCGTAGATTCGAGGTCGTCTCGGCTCTGTTTCATATTCCGTGATCTTTAAAGATTTTACACGAAGGGATCTATCTGCGATTGCCATCTGACTAGATCAGTCATATCAAGTGATAAATCGTTCCAAACTTTTTTGGCGGTGCTGCCAGTTTGGCTATGCGCATGTGCGAAGGTGTCCAAACTGACAATGCTGGAGAGATAGCGAGTCTGGATtgagaaacacagagaaaaaagaaaaaggaGGAAAAGATCCAAGAAAAAATCTAACAAACCCACGCCGAAGGACTGGCATCATGAGGTCCAAAGGCAGGGCACGGAAACTGGCCACAAGTAATGGTGAGGACTTTGTCCTCTACCCCTCTGATGTCCTGGATGATGTGTGTGTACCGGACGGAGACCCCGCGGTACCAACCTCGGCCCCCCCAGCAGAGGACTCCCCCTCCCCTGGCTTCTCTGCTGATGATGATGCCTCTCCCCTGGAGCCATCCCCCTTCCACTCTGCCCTCTACATGCCCCAGGACGAGATGCCCATTCCCGCCGACTTCCAGCTGCGCCAGTCGGGCGTCCCCGGTGTCGGCGGCGGCCTGGGCATCTGGGCACAGAGGACGGTGGACGTGGGCGAGCGCTTAGGACCATACGTGGGCGAGCAGCGGGTGTGCCTGAGACACCCCACCCAAGGCTGGGAGaTCTTGGACGGGTCGGGCCATGTAAAGTTCTGTGTGGATGCCAGCGAGCCTGATATCGGGAGCTGGCTGAAGCACATCCAGTTTTCCCCCACGGCCCACCAACACAACCTGACGCCGTGCCAGATAGATGATCAGaTTTTCTACAGAGTGACTCGAGAGATCCAACCAGGAGAGGAGCTGCTTCTGTACATGAAGGCAGAGGATTATTCATGTGACAGCATGGCTCCTGATATGCACGaggagagacagtaTCGCTGTGAGGATTGTGACCAGCTCTTTGAGTCTGTCTCTGAGCTGCTGGACCACCAGAAGGTTCCGTGTGGGACACCCACCTCAGCCTTCCTGGGGAACCCTGGAGGGGACAGTAGTGACCTGGAAGGCCCCGAAGGCCTGGAGCCCCACGACCTGCACCTGTCCCACAGCCTCAGCCACGACGGCCACGACCACGACGGCCCCCAGGAGTGTAAGGAGTGTGATCAGGTGTTCCCCGACCTCCAGAGTCTGGAggctcactctctgtctcactcggAGGAGAGGGAATACAAGTGTGACCAGTGCCCCAAGGCCTTCAATTGGAAATCCAACCTGATTCGTCATCAGATGTCACATGACAGTGGCAAGCACTACGAATGTGAAAACTGCACAAAGGTACAGTCATGTACCTGCTCAAAGCAGGTGTTCACAGACCCCAGTAACCTGCAGAGGCACATCCGCTCGCAGCACGTGGGGGCGCGGGCTCACGCCTGTCCCGATTGCGGGAAGACCTTTGCCACGTCCTCTGGCCTGAAGCAGCACAAGCACATCCACAGCAGTGTCAAGCCCTTCATATGTAAGTCACTCAGACCCTTCATATgCGAGGTGTGCCACAAGTCCTATACGCAGTTCTCCAACCTGTGCCGCCACAAGCGCATGCACGCCGACTGCCGTACCCAGATCAAGTGTAAGGACTGTGGTCAGATGTTcagcaccacctcctccctcaACAAGCACCGGCGCTTCTGTGAGGGCAAAAACCATTTCACGGCAGGGGGGTTGTTCGCCCATGCCCAAGGCATGTCCCTCCCCGGTGTCCCTGGTGCCATGGACAAGGCCGCTATGGGTGGGATGGGGCACAGCAGTGCCAGCCTGGCAGACTACTTTGGGAACCGGCACCACAGTGGCCTGACGTTTCCATCCGCCCCTGGCTTCCCCTTCAGCTTCCCGGGCCTGTTCTCTTCTGGACTGTACCACCGACCCACCCTCATCCCGGCCACCTCCCCAGTCAGACGGCCCCCAGGTCCAGGTACGGAGCACAGCAAGGGCCCCCTCCTGTCGCCCAGCCCCAGGGCCCAGGAGGCCAGAGAGCTGCTCAAGACCCTCCGCAAGGAGGCATCACCCGGCAACGAGCAGCCTCAGGGGACAGAGCAGCGACAGGCCCAGGGCTCCTCCTCCAAGCAGCGGCATGGCGGCGGCAAGTTGagcagccaatcagagagcagcGACCTGGATGACGTGAGCACGCCCAGTGGGAGCGACCTGGATACCACGTCAGGCTCGGAGCTGGAGAGCGACATGGAGAGCGAAGGCCAGCGGGAGAGGGCACCCCGGGAGAACGGGAAGGGGCCCAAGAGGAAGGCGGGCGGAGGCCCCCAGAGCCCCACCATCCTGACCAGTAACCATACTAAGGAGTTCCAAGGCGGCCCCGCCTTATTCCCTCCCTCGCTGGACGAGCACACGGCTGTCTCAGGGGCGGTCAATGACTCCATCAAGGCCATCGCCTCCATCGCTGAGAGGTACTTTGGCTCCACGGGGCTGGCGGGCCTGCAGGACAAGAAGGTAGGCACCCTGCCCTACCCCTCCATGTTCCCCCTGCCCTTCTTCCCAAACTTCTCCCCGCCCGTCTACCCCTTCCCAGAGAGAGAGCTCAGACCTCCAGGCCTCAAGGGGGAGCCCCAGTCCCCACCTGACGAACCCACCAAGAAAGGCCAGAGCAGGACCTCTGAGTCGCCCTTTGACCTTACCACCAAGCGCAAGCAGGAGGAGAAGGTCCCCGCCCCATTTACCCCCGTCTCCAATTCCAAACCGGAGGCCTCCTCACGTTCCACCAATCAGGACCAGCCGCTGGATTTGAGCATGGGCGGCACGAGGCACCGTAGCAGTAGCCGCACCTCCCGGAGGGAGGAGTTGAAGAAGATCCACGTGTTTGGAGAAGACACGGCAGGGGTGGAGCTTCCTAAAGCCGACACCTCTCTGCAGCACGCTAGGCCCACCCCCTTCTTCATGGACCCAATCTACAGCAGGGTTGAGAAGAGGAAGATGAACGATCCGTTTGAGGCTCTGAAAGACAAGTACATGCGGCCCGCCCCCGGCTTCCTCTTCCATCCACAGATGTCGGCCATTGAGAACATGGCGGAGAAGCTGGAGACGTTTGGTTCGCTTAACCCCGAGTCAGGTGACCTGATGCGCTCCGTCCCCTCCATGTTTGACTTCCGAGCCCCGCCCACTGCCCTCCCCGAGACGCTACTGCGCAAGGGCAAGGAGCGCTACACCTGCAGATACTGCGGTAAACTATTCCCACGGTCTGCCAACCTGACCCGCCACTTAAGGACACACACGGGAGAGCAACCGTACAGGTGTAAGTACTGCGACCGCTCGTTCAGCATCTCCTCCAACCTGCAGCGCCACATCCGCAACATCCACAACAAGGAGAAGCCCTTCAAGTGTCACCTGTGTGACCGCTGCTTCGGCCAGCAGACCAACCTGGACCGTCACCTCAAGAAGCACGAGAACGGTAACCTCTCAGGCACGGCTGCGTCCTCCCCTCGGTCAGAGCTGGACAGCAGCAGTGCCATCCTGGACGACAAAGAGGACTCCTACTTCAACGAAATACGAAACTTTATCGGCAACACAGGCCAGAACCAGCCATCCCCTGACCATTCTGAGGAAGGGTTGAACGGGGGTCCTTTCGAGGAGGAGAAGCCCCTGATGGCCAGCCACGGGTCACATGacctggaggagggggagggagaggagcttgccgccgaggaggaggaggaggaggaaggggagcagAGCGACTCCGCTGCTGGGAAACCTAGAGACGAAGCTCCCCCCAGCAACCTAGATGATGACATCATACACAACGAAATAGAATTTGACGGACCTAGCGATTTGGACCTCAACTGCAAGACCTCCCCAAGGAGGGATTCGgttgtctccctcctctccagctatgaggaggaagaggatcagAGTAGCTACTCTGCGCTGGATCACATCCGTCACTTCTCTGACATGCATAAGATGGAAGACAGTGAGTTCAGTGACGGGGACGGCACCGCCTTCGGCTCCCCCAGCCTGCCTGAGGCCGTCAAACAGCCCCTGTACAGGAAATCCAAGTCCCAGGTGGATgcGTACGCCATGATGCTGTCTCTGGCTGACAAGGACGCACTCCACCCAGCCAACCACACACCAGCCACCATGTGGCACAGCCTGGCGCGGGCCGCTGCTGAGTCCAGTGCCATCCAGTCCCTCAGCCATGTATGATACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2175871 lncRNA downstream 6835 11590191 ~ 11590437 (-) True G1902426
TU2175858 lncRNA downstream 26092 11570940 ~ 11571180 (-) True G1902415
TU2175849 lncRNA downstream 36634 11560328 ~ 11560638 (-) True G1902406
TU2175847 lncRNA downstream 46243 11550643 ~ 11551029 (-) True G1902404
TU2175831 lncRNA downstream 56071 11540866 ~ 11541201 (-) True G1902394
TU2176362 lncRNA upstream 51004 11865546 ~ 11914530 (-) True G1902865
TU2176367 lncRNA upstream 53648 11868190 ~ 11871702 (-) True G1902870
TU2176377 lncRNA upstream 59269 11873811 ~ 11878500 (-) True G1902880
TU2176352 lncRNA upstream 127252 11941794 ~ 11942562 (-) False LOC110503324
TU2176433 lncRNA upstream 270950 12085492 ~ 12085794 (-) True G1902936
XM_021582254.2 mRNA downstream 108446 11483426 ~ 11488826 (-) True LOC110503750
XM_036961758.1 mRNA downstream 108447 11483426 ~ 11488825 (-) False LOC110503750
XM_036961759.1 mRNA downstream 108448 11483426 ~ 11488824 (-) False LOC110503750
XM_021582253.2 mRNA downstream 114335 11480177 ~ 11482937 (-) True LOC110503749
XM_036961052.1 mRNA downstream 118973 11453374 ~ 11478299 (-) False LOC110503748
XM_021581691.2 mRNA upstream 6061 11820603 ~ 11821511 (-) True LOC110503323
LOC110503324 mRNA upstream 127253 11941795 ~ 11982431 (-) False LOC110503324
XR_005039402.1 mRNA upstream 208128 12022670 ~ 12024891 (-) False LOC118944095
XR_005039401.1 mRNA upstream 208166 12022708 ~ 12024886 (-) True LOC118944095
XM_036961975.1 mRNA upstream 212060 12026602 ~ 12059103 (-) False LOC118936592
TU2175607 other downstream 136225 11453404 ~ 11461047 (-) True LOC110503748
TU2175605 other downstream 142114 11453404 ~ 11455158 (-) False LOC110503748
TU2175312 other downstream 404513 11190675 ~ 11192759 (-) True G1901922
TU2175111 other downstream 679180 10916421 ~ 10918092 (-) False LOC110503734
TU2176372 other upstream 153300 11967842 ~ 12052648 (-) True G1902875
TU2176356 other upstream 165269 11979811 ~ 11980462 (-) True LOC110503324
TU2177124 other upstream 902908 12717450 ~ 12723997 (-) False LOC110503775
TU2177125 other upstream 902908 12717450 ~ 12718779 (-) True LOC110503775
TU2178084 other upstream 1902108 13716650 ~ 13719451 (-) True rabx5

Expression Profile