RNA id: XM_036961975.1



Basic Information


Item Value
RNA id XM_036961975.1
length 4828
RNA type mRNA
GC content 0.48
exon number 35
gene id LOC118936592
representative False

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 12026602 ~ 12059103 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTCCTGGCTACACCAGTTCCCCTGCTTGTACTCTACACAGTGCAGTAGGGAAGTCTTGCCAGTAGGAATACTGGGACATAGGCTGACTTTTTATTTCTCTCATTGAGTCATGGTTCCTTCTGGGCTTCATGTTTGGAGATGGATACTATTTGCCTGCTTTCACTGGCTTTGTTTCTGTCAAGAAACTCCAAGACCGTTTTACATGGTAGCCATTCCTGCAGTGATCCAGGCAGGCTCAGAGGCCAAGCTTTGTGCCAGTCTTCTGCAGCCCAACGAGACCCTGGTCATGACCATATCTCTGATTGTTGATGAGCAGAGCAAAATTCTTCTCCAAGAGAGTTCTGACCAAGAGTTTCACCGCTGCTTCCAGTTTCAGGCCCCTCAGGTGGAGAGTGACCAAGTGCAAAACTTTAAGGTGGAGGTTCGAGGTGAAACGTTTCTAtcgacagaggagagaaaggtcatgATCAAACCCTACAGTCCGATGACATTCATCCAAACGAATAAACCAATCTACAATCCAGGACAAACAGTGCAGTTTAGAGTGATCACCTTGGATACCAATTTTAGCCCTGTCAATCAGCTGTACAATGTTGTGGAACTTGAGGATATTCGTCAGAACAGGATTGGACAGTGGGTCAATACATCATCTAGCGGCAACATTCTGCAGCTTTCACACCCCCTGAACTCTGAAGCACCCGTAGGATTATATGCTATTGTAGTGTGGATTGGTGATAACAAAATATACCATAACTTCAAGGTAGAAAAATATGTTTTGCCAAAGTTTGAGATCAAAATGAACTTCACCGATGAGATCAGCATTGTTCAAGAGGAGTATAAATTAGAAGTGTGTGCAACATACACGTATGGACAGCCTGTACCTGGAAAAGCAGACTTAGAGTTGTGCCGACCTTTAAGGAACGATGTATTCATATCAATGAGAATTGATGAGGAAACTCATCGAGTAGTTCCTGATTATACAGCCCCCTGCCACAAAGAGTCAATAGAGATGGACCAAACTGGCTGTGCTTCTCATGTCTTCAACATGTCCATTTTCACAAAGAATGGTGGAGAGAAAATGCTCATAGACAGGTTTAGTTTTAATGcaaaagtagaggaggaggggacagGTATTACACGGTCAGAGGAAAAACACATAGCGGTCTCCTATGTGATTGGAAAACTCACGTTTGTCGACACACCCAAAATCTATGAGCATGGATCAATTATCGAGGGCAAGATAAACGTTGTTCACTTCAACAACACACCTATCTCTGACATGTTAGTCTACCTGTTGGAGAAGAAAGGCTGGTCCTCACATCATCTCCAGAACCTAACCACGGACAGTCATGGTATTGCCAGTTTCTCCCTCAACACAACCACTATGCCCAAAGAGGATATTAACCTCATAGTTAGCAACACACCAGAAGCAGAGAACACTAGATACAGGGTCCCCTATTTCAACAGGGGGCACCACGTACTCTCACTGATCCAGCCCACTGCCCCTCACAGTAAAACATCCAGCTCTCTGGCTATTCAGAAGACGGAGAAACCACTGGCATGTGGGGAGGAAGTGTCAATCACCATCCAGTATGCTATCGTAGGGGAGACCGTCCCAAAGGGCTCCGTGGATGTCATCTACCTGGCCTTATCCAGAGGGGCGATACTTCAGCATGGACATATGAAGGTTACTGTACAGCAGGGGAGTCCTGGTGAGGATGATTTATTAATAACTGAGGGTGAAGTCACCTTGAAGTTGGCCGTGGTTCCAGAGATGACGCCGTTGGTACAGGTCCTGGTGTACAGTATGCTACCCAGCGAGGCTATAATCGCCCACAGCATGAACTTCCCCACTGAGAAATGCTTCAgacacaagGTGTTTGTGGAGTTCTCACCCTCAAAAGCAGTCCCAGGGGAGGAGACCACCCTGCAGCTCTCGGCCCAGCCCGGCTCCCTCTGTGGCCTCAGTGCTGTGGACAAGAGTGTTCACATCATGGAACCAGGGAAGAGGCTGGATGCTAACAAGATATTTGATTTGTTACCAGTCAAGGAGACAACACACATTCCCTACGAGCTTGAAGATCCAGTGTCATGTTTACGTGTAAGACCAAGGAGATATGTAATACCATACCCAGATGGACCAACTGACAGAAAAAATGAACCTTTTGAAGTTTTTCAGAACCTAGGACTGAAGCTGGCAACTAACTTGGTTATAAGAGTACCTTCCTGCCTAAGTTACAAGGGGAATGAGTACCATCACTCCTATGAAGTATCCTACAGACAGTACTCCGATCCTATAGCCATGTACAGCCTTGTGGATCAAGTTGGACTTGGTGGAGTACCCGGTGATGGATTTAGTGCCGCTCCAGCTCCACCACCCATACAGACAGTCCGTACGTTCTTCCCCGAGACATGGATATGGGATCTTATGGAAGTTGGGGAATCTGGAACACTAGACATTCCCCTTACAGTCCCAGACACTATCACCACCTGGGAGACAGAGGCATTCTGCCTGGCCCCTGACGGCTTCGGTCTGGCTCCTCCTGTGGAGATCACTGTCTTCCAGCCTTTCTTCCTAGAGCTCACCCTGCCCTACTCCATCATCCGTGGAGAGCATTTTGagctgaaggccactgtgttcaacTACCTGTCCAAATGCATCATGGTTTCTGTGACTCCGGCTCCTTCCTTAGACTACACTCTCACACCCCTGAATGATGTCCAGTATTCATCATGCTTGTGTGCCAATGGACGAAAGACCTTCAGTTGGACAATGGCACCCTCTGTACTGGGGGATTTGAATGTGTCCGTTAGTGCAGAGGCTGTCCAGTCCCACACTGCATGTGACAATGAGATTGTGAACGTACCAGAGAGAGGACGTATCGACACAGTTACAAAGAGCCTGCTAGTGAAGgcaGAGGGAACAGAGAAGACCGACACCTACAACTGGTTGCTGTGTCCAACTGGAGAAACTCTGACAGAGAAGGTGGAACTGCAACTCCCCAAGAATGTGGTAGATGGTTCTGATCGAATTTCTCTCTCAGTCCTGGGGGACATCCTGGGTCGGGCCCTCAAGAACCTGGATGGACTGCTGCAGATGCCGTATGGGTGTGGAGAGCAGAATATGGCCCTCCTCGCCCCCAATATCTACATACTCGAGTACCTGAGGAACACAGAGCAGCTCACTCCAGCAATTCGAGACAAGGCTAACAAGTTCCTCACTAGTGGTTACCAAAGGCAGCTGAACTACAAGCATTTTGATGGTGCATACAGCACATTTGGACAAGGCTCGGGGAATACTTGGCTGACTGCTTTTGTCTTGAGATCCTTTGGCAAAGCACAGTCTTTCATTTATATTGACCCGGCGCAAATGACAGATTCCACGAGTTGGTTGGAAAGTCAGCAAGGCAAACATGGGTGTTTTGTCAGATTGGGGAAACTCTTTAATAACAGAATGAAGGGTGGGGTGACGGATGAAGTCACACTGACGGCCTACATCACTGCTTCAATGCTGGAGCTCAACATGTCAGTGTCGGATCCTGTTTTGTACGGCAGTTTGTCTTGCCTGAAGAACTCCACCAGTGATTTGTCCAACACCTACACTACTGCTCTGCTGGCCTACACCTTTACCCTGGCAGGGGACATGGAGACCCGGGCCCAGCTTCTGCAGCACCTGGACACGGTCGCAATACGAGAGAGGGGTCTCCTGCACTGGACTCAGACCTCCTCAGAGACCTCAGCCTCCCTGGCAGTGGAGATCAGCTCCTACGTTCTGCTGGCTTCCCTCAGTGCCTCCCCTCTGTCTACCACTGACCTGGGCTATGCCTCCCACATCGTCAGGTGGCTGGTGAGGCAGCAGAACGCCTACGGAGGCTTCTCTTCCACACAGGACACAGTGGTAGCCCTCCAGGCCCTGGCTCTCTACTCCACCAGGGTGTTCAGTAGAGAGGGCACCagcacagtgacagtacagtCTCCCAGTGGGGGACAGCACCTCTTCAATGTGAACCAAAACAACAAGCTTCTCTACCAGGAGAGTGCGCTGCAGGACACAGAAGGGAAGTACACGGTGGAAGTGAAGGGCAGTGCTTGTGCATCAGTGCAGGTGGCGCTCCACTACAACATCCCTACTCCTACTGACAGCACAACGCTCAGCATCCAGGTGAAGACAGAGGTGGACTGCAACAGCAACTCTTTAAGACCCAGAGTCACGCTGAACCTCGAGTCTCAATATTCTGGAAAGGAGCTGACCACCAATATGATTATTGTGGATTTGAAAATGCTGTCTGGATTTGCTCCAGACCCAGACTCTTTGGAGAGGCTGAGGAGGTCATTTCTAGTGGATCGTGTTGATACTGAAGATGACCATGTGTTAATGTACTTGACAGAGTTACCATCACTATTGCCTTTGAAACACACCCTGGACATCATACGGGAGCTCCCAGTACAAAATCTAAAGCCAGCGGTGGTCAAGATCTACGACTACTACCAGCCGAgtgaccaggcagagacagaatATGTCTTCCCCTGCAAGTAGAGGTTACAAACTGGTGTCCTATTTGAAATCTAGAATGATTGGTGATGTTGAATTAGTCATTTTATTTAGCTGGCCTGACCCTTATACTATATGTAATATTCCTTTATTAATTGACCTAAATGCTGGCTATTGTTGTTAGAGAATTCTTTACATTCATTGTATATGCCGCTTTGAAGATGTAAGAAGAAAATGACATTAACAGAGGTCACACATGCAACCCTTGAGGCATCTTTCAAGCTCTAAAGTAAAGGATGTAAAATTACTGGAATTAAAGTTTTTAATGAAATCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2176352 lncRNA downstream 84040 11941794 ~ 11942562 (-) False LOC110503324
TU2176362 lncRNA downstream 112072 11865546 ~ 11914530 (-) True G1902865
TU2176377 lncRNA downstream 148102 11873811 ~ 11878500 (-) True G1902880
TU2176367 lncRNA downstream 154900 11868190 ~ 11871702 (-) True G1902870
TU2175962 lncRNA downstream 231657 11768771 ~ 11794945 (-) True G1902514
TU2176433 lncRNA upstream 26389 12085492 ~ 12085794 (-) True G1902936
TU2176437 lncRNA upstream 35934 12095037 ~ 12098085 (-) True G1902939
TU2176540 lncRNA upstream 157039 12216142 ~ 12216349 (-) True G1903027
TU2176545 lncRNA upstream 163589 12222692 ~ 12222966 (-) True G1903032
TU2176546 lncRNA upstream 163923 12223026 ~ 12223292 (-) True G1903033
XR_005039402.1 mRNA downstream 1711 12022670 ~ 12024891 (-) False LOC118944095
XR_005039401.1 mRNA downstream 1716 12022708 ~ 12024886 (-) True LOC118944095
LOC110503324 mRNA downstream 44171 11941795 ~ 11982431 (-) False LOC110503324
XM_021581691.2 mRNA downstream 205091 11820603 ~ 11821511 (-) True LOC110503323
XM_036961632.1 mRNA downstream 212063 11597278 ~ 11814539 (-) False LOC110503751
XM_036961904.1 mRNA upstream 239338 12298441 ~ 12371391 (-) False LOC110503325
XM_036961905.1 mRNA upstream 239338 12298441 ~ 12371391 (-) True LOC110503325
XM_036961925.1 mRNA upstream 319801 12378904 ~ 12386064 (-) True LOC110503763
XM_021582280.2 mRNA upstream 346880 12405983 ~ 12419981 (-) True LOC110503765
XM_036961927.1 mRNA upstream 364173 12423276 ~ 12427988 (-) True il4i1
TU2176356 other downstream 46140 11979811 ~ 11980462 (-) True LOC110503324
TU2175607 other downstream 565555 11453404 ~ 11461047 (-) True LOC110503748
TU2175605 other downstream 571444 11453404 ~ 11455158 (-) False LOC110503748
TU2175312 other downstream 833843 11190675 ~ 11192759 (-) True G1901922
TU2175107 other downstream 1108668 10916474 ~ 10917934 (-) True LOC110503734
TU2177124 other upstream 658347 12717450 ~ 12723997 (-) False LOC110503775
TU2177125 other upstream 658347 12717450 ~ 12718779 (-) True LOC110503775
TU2178084 other upstream 1657547 13716650 ~ 13719451 (-) True rabx5
TU2178133 other upstream 1698725 13757828 ~ 13758644 (-) True G1904408
TU2178616 other upstream 1983867 14042970 ~ 14043449 (-) True G1904846

Expression Profile