RNA id: TU2177125



Basic Information


Item Value
RNA id TU2177125
length 985
RNA type TUCP
GC content 0.49
exon number 3
gene id LOC110503775
representative True

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 12716285 ~ 12724009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacacacacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccaatggatATAATTGACTCATTATTGGAGTGTGAAGTAATAAAAGTTAATGCACTGTTCTACACACACAGAGTTTAGGAACATGACCTTATAAGCCAGTGGATTTGTAGCTACTGTTTAAGTGACGTTGGCATTTAAAAATATTCAGATCACTCACATGTACACCTGGGGTTTACCATTGGTAATGTACATTCAGCATTTGATTGTAAAATCCTACACTTTACAGCTCAAATACCATTGTAAGTCAGCTTGAATAATAAAGGCTTTTGGAGTTAATTTAGATTCCTTTCCTTCAGGTAGATTTATCATTATATATTTTTCACAGGTTGGGGTACTAAACAACAACTTGCCTTCATATGCACAGCTTGGTTGGATAGCCCAGCCTGCAGCTACTGCTCTCCAGCCCATAAACCATTGGTCTTACCCAGAGTACCTCCAGCAGCATGAccccaccacctcaaccaccaccaccctgcCCCTCACCACTGACACGTACATGCAGCCCATGTGTCCCAGCTACACCGTGGTGGGCCCATCCTCCAtgctcacctacacacacacgcctctCTTTACCAACTTCGGGACCCTAGCACCAACATCCACAGCCCTACCACAAGTGGACCTCCAGGACTCGGTGCTGACTTATATCCCGTGGGCCCAGCCGCTAACCACCATCCCTTCATCGGGTGTGCAGTTTGCCTCTCACCCTGCCACTCTGGCTGGGTCTCAGCTGCTTCCGATGTCCATGCCAGTGACCCCCACCATGCCCCAGCAGGACCCTCAGCCCCAGCCCCTGGAGCAGCACCCTGCTGGGGCTGAAGAACCCAACCCTCTGGAAAAACTTCTTGAGGACCAAGATCAGGATGACAAATACACATATGTGAACAGTTCCTCAATCTTCATCCCCGGTGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2177117 lncRNA downstream 7852 12709377 ~ 12709598 (-) True G1903523
TU2177062 lncRNA downstream 8959 12704010 ~ 12708491 (-) True G1903479
TU2177064 lncRNA downstream 14319 12637922 ~ 12703131 (-) True G1903481
TU2177028 lncRNA downstream 106989 12610169 ~ 12610461 (-) True G1903452
TU2177007 lncRNA downstream 145613 12571329 ~ 12571837 (-) True LOC110503769
TU2177173 lncRNA upstream 98410 12817189 ~ 12831695 (-) True G1903574
TU2177196 lncRNA upstream 142852 12861631 ~ 12933686 (-) True G1903595
TU2177199 lncRNA upstream 148934 12867713 ~ 12939238 (-) True G1903598
TU2177270 lncRNA upstream 303647 13022426 ~ 13070359 (-) True G1903640
TU2177207 lncRNA upstream 338324 13057103 ~ 13068432 (-) True G1903604
XM_036961911.1 mRNA downstream 120758 12570052 ~ 12596692 (-) False LOC110503769
XM_036961912.1 mRNA downstream 120758 12570052 ~ 12596692 (-) False LOC110503769
XM_036961927.1 mRNA downstream 289462 12423276 ~ 12427988 (-) True il4i1
XM_021582280.2 mRNA downstream 297469 12405983 ~ 12419981 (-) True LOC110503765
XM_036961925.1 mRNA downstream 331386 12378904 ~ 12386064 (-) True LOC110503763
XM_021582293.2 mRNA upstream 52078 12770857 ~ 12775243 (-) True LOC110503777
XR_002470517.2 mRNA upstream 68528 12787307 ~ 12794824 (-) False LOC110503783
XR_002470516.2 mRNA upstream 68528 12787307 ~ 12796055 (-) True LOC110503783
XM_036961917.1 mRNA upstream 162995 12881774 ~ 12895814 (-) False LOC118944087
XM_036961916.1 mRNA upstream 162995 12881774 ~ 12898615 (-) False LOC118944087
TU2176372 other downstream 664802 11967842 ~ 12052648 (-) True G1902875
TU2176356 other downstream 736988 11979811 ~ 11980462 (-) True LOC110503324
TU2175607 other downstream 1256403 11453404 ~ 11461047 (-) True LOC110503748
TU2175605 other downstream 1262292 11453404 ~ 11455158 (-) False LOC110503748
TU2175312 other downstream 1524691 11190675 ~ 11192759 (-) True G1901922
TU2178084 other upstream 997871 13716650 ~ 13719451 (-) True rabx5
TU2178133 other upstream 1039049 13757828 ~ 13758644 (-) True G1904408
TU2178616 other upstream 1324191 14042970 ~ 14043449 (-) True G1904846
TU2178650 other upstream 1370943 14089722 ~ 14142728 (-) True G1904877
TU2178696 other upstream 1461284 14180063 ~ 14214520 (-) True G1904919

Expression Profile