RNA id: XR_002470516.2


Basic Information

Item Value
RNA id XR_002470516.2
length 1285
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110503783
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 12787307 ~ 12796055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaagccatttcaggctatcaatcaagatAGACAAGCAAGCTactcttagctggcatgcctgttGGCAAGTTGggagactttagaaaagcaacaTTCCACATTCTCCAACTTCAGGCCAGGGGCCTAAGCTCCCTATGGACCACCCCCCCAGCCATCCTTACATACTTTGTGCCCCTCAGATTTTTTTGTGCCCATACTTTGTGCCCCTCAGATTTTGCAATCAGCCCCTGTTGGGGCTGATTGCACAGAAGGACATTGGAGGAAAGCACACTAATATGGACTATCACAAGTCGGATTTGTAACCCACAAATGTACAGGCCTGCTTGCCAGAATGTCTCATAAGGTATGAAAAGCCTCTCACgtgcaagaaagagagagaaagGTCACAGCTCTGTGGCGAAGAAACAATTGCGAGGTGGTGGTTGCTGATGTGAGGTCTACAGACAAAAAATCCTCTTTCCTTCTCCAACATTCAGAGTTTAAAACTCTGCAGCCCCACAAATGGCTTGTGGATGAGACAATCGAATGGTACTTTCAAGCCACCACAAAAAGCTGTGGTCACGGTACAAAGAGTTACACCCTAAATCATTACTCAGCCCAAGTCATTCTAAATGGAGAAAGAAGTTCAGTGTGCAAGCAAAGTCTGCCCAAGTATTTGCATGAACCATCAGGCCAAGTGTTCTTGGTTGACCCTGCTGGACAGAAAGAGAACGAGGAATCGGAACACGCTGCATTAAAATTCAGAGAATACTTCAAAATGAGAAGATCCTGCCATGGAAAAGACGACTTGGTGGACATAAAGTGGAAAGGAGGGGAAATAACTCACAACATGCAGGAGGACACCTTCAACTGCGGGGTCTTTGTAATGCAGTTGTGTGGGACAGCCATATGTTCAGTTCATGCCTGTGATGTCAGAGTTCAACAAAGCCAACAACTGCTTCATGTGTGCCACTGATAAAGAACCTGGATGTGGCCCAAAGACTGGATAGAATATTTTGCATGCCAACGGTGGGTCCATGTGCTGTGCCTAGGAATGAAGACAAAAGAGTTCAACAGAGTAAAGAACACAAACTGGAAGTGCagtctttgttgttgaaaatccacactgaagaggctctgaaatgtacatcaaccagggataaagagaaagTTAACACTGAAATGTTTTGTACTTTGAAGAAAAGTGTCTGACATGTTGGAAAAGATTAAAGGTCTACAATTTCCGTTTAATTTGCCAAAATAAAAATTTTATTCATTGATTTACTGGCCACCATTACTGTGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2177117 lncRNA downstream 77709 12709377 ~ 12709598 (-) True G1903523
TU2177062 lncRNA downstream 78816 12704010 ~ 12708491 (-) True G1903479
TU2177064 lncRNA downstream 84176 12637922 ~ 12703131 (-) True G1903481
TU2177028 lncRNA downstream 176846 12610169 ~ 12610461 (-) True G1903452
TU2177007 lncRNA downstream 215470 12571329 ~ 12571837 (-) True LOC110503769
TU2177173 lncRNA upstream 21134 12817189 ~ 12831695 (-) True G1903574
TU2177196 lncRNA upstream 65576 12861631 ~ 12933686 (-) True G1903595
TU2177199 lncRNA upstream 71658 12867713 ~ 12939238 (-) True G1903598
TU2177270 lncRNA upstream 226371 13022426 ~ 13070359 (-) True G1903640
TU2177207 lncRNA upstream 261048 13057103 ~ 13068432 (-) True G1903604
XM_021582293.2 mRNA downstream 12064 12770857 ~ 12775243 (-) True LOC110503777
XM_021582289.2 mRNA downstream 63298 12716285 ~ 12724009 (-) False LOC110503775
XM_021582290.2 mRNA downstream 63298 12716285 ~ 12724009 (-) False LOC110503775
XM_036961911.1 mRNA downstream 190615 12570052 ~ 12596692 (-) False LOC110503769
XM_036961917.1 mRNA upstream 85719 12881774 ~ 12895814 (-) False LOC118944087
XM_036961916.1 mRNA upstream 85719 12881774 ~ 12898615 (-) False LOC118944087
XM_036961919.1 mRNA upstream 85719 12881774 ~ 12898724 (-) False LOC118944087
XM_036961920.1 mRNA upstream 85719 12881774 ~ 12898725 (-) False LOC118944087
XM_036961915.1 mRNA upstream 85719 12881774 ~ 12898729 (-) True LOC118944087
TU2177124 other downstream 63310 12717450 ~ 12723997 (-) False LOC110503775
TU2177125 other downstream 68528 12717450 ~ 12718779 (-) True LOC110503775
TU2176372 other downstream 734659 11967842 ~ 12052648 (-) True G1902875
TU2176356 other downstream 806845 11979811 ~ 11980462 (-) True LOC110503324
TU2175607 other downstream 1326260 11453404 ~ 11461047 (-) True LOC110503748
TU2178084 other upstream 920595 13716650 ~ 13719451 (-) True rabx5
TU2178133 other upstream 961773 13757828 ~ 13758644 (-) True G1904408
TU2178616 other upstream 1246915 14042970 ~ 14043449 (-) True G1904846
TU2178650 other upstream 1293667 14089722 ~ 14142728 (-) True G1904877
TU2178696 other upstream 1384008 14180063 ~ 14214520 (-) True G1904919

Expression Profile