RNA id: XM_036961916.1


Basic Information

Item Value
RNA id XM_036961916.1
length 2383
RNA type mRNA
GC content 0.55
exon number 15
gene id LOC118944087
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 12881774 ~ 12898729 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGGGCGAGACCCTGGAGTCAGAGACAAAACAGTTTGAGGACCTGGAGTTCCAGCAGCTGGAGAGAGAAAGcagcctggaggaggagagggagaccatCAGCCAGCAGCTGCTGCAGGAGAGGGCTGAGTACCACACCAGCGTGGCCAAGAGGAAGGACAAGATGGCAGCTCTGGAAGGCCAGGCCAGTCAGCTGGGACAGCAGGCTTCTCAGGAGTGTGACAGGCTGGCTAAGGACAGGAACCTTACCCTGCAGATTCTCCATAAggaGAAAGAGAGGCTATCGGCCTTAGAGAAGAGGTACCTCAGCCTTACCGGAGGAAGATCTTTCCCTAAGTGTTCCAGCACCATGAAAGAGGAATTGCTCCATATCAGCCAGACTGACCTGTTAGAGGACTCCCACTCCCAGCATCCTCTCTGCCGTCCCGCTGCTTCCTATTTAAGCGCCGCCTCTCAGTTATACCCAGGGGGCAGCCCGACAGAGGAGTACGTGACTGTGGGCCAGTTAACTCAGTTCTTTGGGATGCCGAAGGTCGAgtcctcccctacctctcctctccggCCCCTCCAGTCAGGAGCTGGAGACCCCGccttctcctgcctctcctttcGTCAcggctcctccccctctctctctgttgagTATCAGCCAGAGTGCAGTAGGCCTCAAATCCCCACTCTCGATTTAGAGCAGTGGTACCAGGAGGTGATGGCTGCTGTGGAGAGCAGCCAGctctgcccccctccccctctcccagctAAACCTCTATCCACTCGCAGGCCTATGCAGGGGTTCCGTTCCAAGCTGGACAGTGATGCTGGACAGACGGTACATCAACCCAAAGCAGGCTCCGGATCCCATCTGCAGTACGTAGCCACCACACTGGGACGCAACACAACCTCCAAGAGCCCACTGATGGTTCCCAACAGTACAGGCAGTTTGCCACGGAACTTGGCTGCCACCATGCAGGACATAGAGACCAAGAGAGCGCTAGCCTTACAGCAGAAAGAGTCCTCCTTGCCTTCCACGTCTGAGTCTCCCTGCTCCACCATGGACaatcccacagacagacagatagacagacagaccactcAACCTGGGAGCCAACAGGTGATTGAGGAGCAGCGGCGTCGATTGGCTGAGCTGAAGCAGCGGGCTGCAGTGGAGGCCCAGTGCCAGTGGGATGCCCTCCACGGCTCTCAGACCCACCTCTACGCCCCCTCACACGCCCACGGCCCTCCCATGGTGCACCACTCCATCCTGCACCACCAGCCGCCGTCGGCGGGCGAGCAGCCGTACGACACACTGAGCCTGGAGAGCTCCGACAGCATGGACACCAGCGTCTCCACAGGCAACAACTCGGCCTGCTCCCCCGACAACATGTCCAgTGCCAGTGGGATGGATGCGCTGAAGATCGAGGAGATGGAGAAGATGCTGAAGGAAGCCCACCTAGAGAAGGCCAGGCTCATAGAATCCAGAGAGCGAGAGAGCCATGCCCGTAGGCAgatgctggaggaggagaggaggcggcGCGAGGAGGCTGAGAAGAGGCTGCAGGACGAGACGGTGCACAGGCAGCAGCTCGTGGACAAGGAGGTGAAGATGAGGAGCAAGAACTTCTCCCAGGCCCGTCCTATGACTCGTTACCTGCCCATCCGCAAGGAGGAGTTTGACCTGCGCTCCCACATCGAGTCATCCGGCCACAACGTGGAGACCTCTTACCACGTGATCCTCACAGACAAGATGTGTAAGGGTTACCTGGTCAAGATGGGCGGCAAGATCAAGTCGTGGAAGAAACGCTGGTTTGTCTTCGACCGCCTCAAAAGGACCTTCTCCTATTACGTTGACAAGCACGAGACCAAACTGAAAGGAGTCATCTATTTCCAGGCCATTGAAGAGGTCTATTACGATCACCTGCGTAGCGCCACGAAGAGCCCCAATCCCTCGTTGACCTTCTGTGTGAAGACTCACGACAGACTCTACTACATGGTGGCCTCTGCCCCGGAGGCCATGAGGATATGGATGGATGTTATAGTAACTGGAGCCGAGGGCTACACGCAGTTCATGAACTAAGAGACGGCTGGGACACACTTCAATAGACTCAGGCCTTATCCCTCCCAGTATTGGGAAATTGCCTTGTTACGTTCATTATCTATTTTTAAATCACTTTACAATAGACGTTTTTCTACTTGCTTCTGCCCGCAGATTGAAAAAGACACTGTATATAACCAATGTCAGACTTTCCGCTCAAAAGCCTTTATTTTTGCCAAATTGAGTGTTACATGCTCTTGCTTGTGAGACCTACTTTGTGTATCCGTGTCTAAtcgttcactttttttttttacactggaaTAGTGGAGAATAAACCTAATTGAAACCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2177173 lncRNA downstream 50079 12817189 ~ 12831695 (-) True G1903574
TU2177117 lncRNA downstream 172176 12709377 ~ 12709598 (-) True G1903523
TU2177062 lncRNA downstream 173283 12704010 ~ 12708491 (-) True G1903479
TU2177064 lncRNA downstream 178643 12637922 ~ 12703131 (-) True G1903481
TU2177028 lncRNA downstream 271313 12610169 ~ 12610461 (-) True G1903452
TU2177270 lncRNA upstream 123811 13022426 ~ 13070359 (-) True G1903640
TU2177207 lncRNA upstream 158488 13057103 ~ 13068432 (-) True G1903604
TU2177283 lncRNA upstream 171982 13070597 ~ 13070898 (-) True G1903653
TU2177781 lncRNA upstream 211800 13110415 ~ 13110731 (-) True G1904093
TU2177795 lncRNA upstream 235630 13134245 ~ 13134915 (-) True G1904102
XR_002470516.2 mRNA downstream 85719 12787307 ~ 12796055 (-) True LOC110503783
XR_002470517.2 mRNA downstream 86950 12787307 ~ 12794824 (-) False LOC110503783
XM_021582293.2 mRNA downstream 106531 12770857 ~ 12775243 (-) True LOC110503777
XM_021582289.2 mRNA downstream 157765 12716285 ~ 12724009 (-) False LOC110503775
XM_021582311.2 mRNA upstream 54069 12952684 ~ 13036439 (-) True LOC110503778
XM_021582321.2 mRNA upstream 526113 13424728 ~ 13437553 (-) False LOC110503787
XM_021582322.2 mRNA upstream 526113 13424728 ~ 13437553 (-) False LOC110503787
XM_036961068.1 mRNA upstream 576866 13475481 ~ 13546234 (-) False LOC110503790
XR_005039404.1 mRNA upstream 647722 13546337 ~ 13555170 (-) False LOC110503789
TU2177124 other downstream 157777 12717450 ~ 12723997 (-) False LOC110503775
TU2177125 other downstream 162995 12717450 ~ 12718779 (-) True LOC110503775
TU2176372 other downstream 829126 11967842 ~ 12052648 (-) True G1902875
TU2176356 other downstream 901312 11979811 ~ 11980462 (-) True LOC110503324
TU2175607 other downstream 1420727 11453404 ~ 11461047 (-) True LOC110503748
TU2178084 other upstream 818035 13716650 ~ 13719451 (-) True rabx5
TU2178133 other upstream 859213 13757828 ~ 13758644 (-) True G1904408
TU2178616 other upstream 1144355 14042970 ~ 14043449 (-) True G1904846
TU2178650 other upstream 1191107 14089722 ~ 14142728 (-) True G1904877
TU2178696 other upstream 1281448 14180063 ~ 14214520 (-) True G1904919

Expression Profile