RNA id: TCONS_00005000


Basic Information

Item Value
RNA id TCONS_00005000
length 1372
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_002690
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17543276 ~ 17550931 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAATCTTTTAATGTTTTCTCTCTAAAGAGATGAATCACTGCGAGCTTGAAGAAGTGACACAACATATCAACAACAAAATTTCCATGATCAAAAGACTCCTGGAGCTTCGAGCTGTTGCAAAAGATCCAGACAAACGTGGGACTCTTCTCAAAATTGGGCAAGAAGTCAGTGCCATAAATGAGCTTCTTGATCGCTTTGAGAAATATGTGGGCAAGCAAAGAGACTTGCTGAAGCATTTGAAGGATCTAGAAGGTTTTTTTCAGGAGGATGAACAAGATGCCTATCACCTTAAGAACAACACCCCTCCGCACATGCCAAAAAGAGGCCAGCAAGCAGCTCCACAAGGagGAGGACAGGTGGCAGTTCAGAGCAGGCAGACAGATGCGCCAGCCGCCCCTCAGGAACAAGGGCCGCCCAGGAAAACTCAGCGCAACCAGATCAAAGAGATGGAGTTCATTACCGTCCCTGAATTTGACAGCATACCACCGTACATGAAAGGGCGCGTAACATACGATCAGCTGAACGCAGCAGTACAAAGCATCAACACAGCCGtgacctcaaaatataaaatCCTCCATCAGCCAGTCAAGACCCTAAACAACGTGTCTCGCTCGCTCCAGCAGCGCTTTAAAGATCAAGAAACAAAAGACACCAAAGGTCATTTTTTTGTCGTGGAGCAAGACATCAAAGAGTTTGCCCAGCTGAAGGTGGACAAGCGGTTTGTGGGCATGTTGAACATGTTACGCCACTGCCAGCGTCTGAAGGAGGTCCGAGGCGGTGGTCTTACACGATTCATCTTGTTATAAAGACGCCCACATCCCTGCGTTTAAAAAGCCACTATGGACAAAAGGTTTTCAGTGGAATGAACATCAATGTTTATGTCACCAAAAACAGACCATTTCATACTGGTGGTGTTTCTGCAGAGAAGAGAAACAGAGAAAGGATTTCATGTTTAAATATGCTCTGTTATCTGTCTTGTAACAGAAATGTCAAAATTGACACATAGtttatttaaagtgttaaaataagCTGTAAATGTTTCAGAATTTATGTTTGATGTATAATTTTGTATGTTGGGGAACAAAACCTCATTATTTTGCTGAACAAACTTCTTTCCAATTAATGTCAACAACAGACTTAATTGACTCATAAATTCAAAAGCGCTGTTCTGAAAACCTGTTACTAATTCCCAGCGGTGCCCCATTGTGAATTAGCATTCTGGATTTGGCTTACAAATTGACATTGTGAATTAACGGCCAGGTCACTTTATCTGTGATGATGAAATTATCAATTGATTGCTGTTTTATTTATCTTGGTGGAAAGTGCAGAAGTGTTGGAGCtctaataaaattgtatttttttgtaacctCA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0007059 chromosome segregation biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0051301 cell division biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000776 kinetochore cellular_component
GO:0072686 mitotic spindle cellular_component
GO:0000940 condensed chromosome outer kinetochore cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005694 chromosome cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-334 Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including chromosome segregation; mitotic cell cycle; and regulation of microtubule polymerization or depolymerization. Predicted to be located in cytoplasm; kinetochore; and microtubule. Predicted to be part of outer kinetochore. Predicted to be active in mitotic spindle and spindle microtubule. Is expressed in optic tectum and retina. Orthologous to human SKA1 (spindle and kinetochore associated complex subunit 1).

Ensembl:

ensembl_id ENSDART00000057513

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006026 lncRNA downstream 32077 17509980 ~ 17511199 (-) False XLOC_002688
TCONS_00004994 lncRNA downstream 79859 17460789 ~ 17463417 (-) False XLOC_002686
TCONS_00006025 lncRNA downstream 100855 17437490 ~ 17442421 (-) False XLOC_002685
TCONS_00006024 lncRNA downstream 100855 17437490 ~ 17442421 (-) True XLOC_002685
TCONS_00006023 lncRNA downstream 101294 17437490 ~ 17441982 (-) False XLOC_002685
TCONS_00006027 lncRNA upstream 31853 17582092 ~ 17587901 (-) True XLOC_002691
TCONS_00005011 lncRNA upstream 181054 17731293 ~ 17745344 (-) False XLOC_002694
TCONS_00005008 lncRNA upstream 181054 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00005006 lncRNA upstream 181054 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00005007 lncRNA upstream 181192 17731431 ~ 17745344 (-) False XLOC_002694
TCONS_00004996 mRNA downstream 41748 17485945 ~ 17501528 (-) False XLOC_002687
TCONS_00004993 mRNA downstream 58512 17460361 ~ 17484764 (-) False XLOC_002686
TCONS_00004992 mRNA downstream 58514 17460358 ~ 17484762 (-) False XLOC_002686
TCONS_00004995 mRNA downstream 76286 17462543 ~ 17466990 (-) True XLOC_002686
TCONS_00004990 mRNA downstream 259221 17254502 ~ 17284055 (-) True XLOC_002683
TCONS_00005002 mRNA upstream 2494 17552733 ~ 17587832 (-) False XLOC_002691
TCONS_00005005 mRNA upstream 149777 17700016 ~ 17710637 (-) True XLOC_002693
TCONS_00005009 mRNA upstream 181193 17731432 ~ 17745374 (-) False XLOC_002694
TCONS_00005012 mRNA upstream 437049 17987288 ~ 17988779 (-) False XLOC_002696
TCONS_00005013 mRNA upstream 437196 17987435 ~ 17988779 (-) False XLOC_002696
TCONS_00004999 other downstream 254 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00004998 other downstream 24242 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004997 other downstream 41872 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00004991 other downstream 200795 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00004980 other downstream 386601 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00005003 other upstream 12736 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00005004 other upstream 76889 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005042 other upstream 2933575 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005057 other upstream 3110178 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005060 other upstream 3358203 20908442 ~ 20908556 (-) True XLOC_002725

Expression Profile

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