RNA id: TCONS_00053296


Basic Information

Item Value
RNA id TCONS_00053296
length 599
RNA type processed_transcript
GC content 0.52
exon number 4
gene id XLOC_027034
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4832804 ~ 4926061 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCAGAATTATTGAATATGGTGTTATGGACTGACCCACTGGGCAGGACAGTTGGCTTCAAACTCTCGCTGGTGTTTCTCGCAGGCTGAAGTGAGATCTTTGTTGACGTCCAGACACTTCCAGAGCTCATCTCTTGCGTCCCAGCAGGCTTTGCGCTGACTGGCGTTAGGAGCGCTCATCTCTGTCTCTCCTCACTCTATCTGCAGATCTGGCCGCTTCGTACCTGAGAGGTCAGCGCAAATTCACAGAGGACGTCGACTGGTCTTACACAGGAGCCCTGAACCAGAAGCACTGGGTAAAGAAGTATCCAGTGTGTGGCAATGCCAGGCAGTCTCCCATTGACATCAGTGAGGAGTTCACTCAGGTCAGGCTTCAGTACCAGAACCTGCAGCTGGAGAACTGGGAACAACCAACCACTGATTCAACCACCATCACTAATGACGGCAAAACAGTGGTGATTGGTCTGAACAGTGAGTACTTCATAAGTGGAGGTGGGCTCAGATCCAGGTTTAAAGTGGGCCGGATCACGTTCCACTGGGGCAGATGTAACGCCACTTCAGACGGATCAGAACACAGCCTGAATGGCAACAGGTTCCCCCT

Function

GO:

id name namespace
GO:0072350 tricarboxylic acid metabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006101 citrate metabolic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0048037 obsolete cofactor binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-050506-100 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation. Predicted to act upstream of or within dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; cranial ganglion; neural rod; and neural tube. Orthologous to human PTPRZ1 (protein tyrosine phosphatase receptor type Z1).

Ensembl:

ensembl_id ENSDART00000150309

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057558 lncRNA upstream 118924 4711163 ~ 4715161 (+) False XLOC_027032
TCONS_00057559 lncRNA upstream 118924 4711677 ~ 4715161 (+) True XLOC_027032
TCONS_00053292 lncRNA upstream 248201 4585101 ~ 4585884 (+) True XLOC_027030
TCONS_00057556 lncRNA upstream 348097 4482757 ~ 4485988 (+) False XLOC_027028
TCONS_00057557 lncRNA upstream 348097 4482976 ~ 4485988 (+) True XLOC_027028
TCONS_00057560 lncRNA downstream 50262 4938766 ~ 4954475 (+) False XLOC_027035
TCONS_00057561 lncRNA downstream 50262 4938766 ~ 4962622 (+) False XLOC_027035
TCONS_00057562 lncRNA downstream 50315 4938819 ~ 4959863 (+) False XLOC_027035
TCONS_00057563 lncRNA downstream 50337 4938841 ~ 4949696 (+) False XLOC_027035
TCONS_00053301 lncRNA downstream 50369 4938873 ~ 4940727 (+) False XLOC_027035
TCONS_00053294 mRNA upstream 1936 4803698 ~ 4832149 (+) False XLOC_027033
TCONS_00053295 mRNA upstream 10357 4816695 ~ 4823728 (+) True XLOC_027033
TCONS_00053291 mRNA upstream 309801 4509996 ~ 4524284 (+) True XLOC_027029
TCONS_00053288 mRNA upstream 475145 4272622 ~ 4358940 (+) False XLOC_027025
TCONS_00053287 mRNA upstream 477254 4267451 ~ 4356831 (+) False XLOC_027025
TCONS_00053299 mRNA downstream 753 4889257 ~ 4925728 (+) False XLOC_027034
TCONS_00053300 mRNA downstream 13888 4902392 ~ 4911301 (+) True XLOC_027034
TCONS_00053304 mRNA downstream 244447 5132951 ~ 5150347 (+) True XLOC_027037
TCONS_00053305 mRNA downstream 267613 5156117 ~ 5161877 (+) True XLOC_027038
TCONS_00053306 mRNA downstream 292146 5180650 ~ 5183337 (+) True XLOC_027039
TCONS_00053293 other upstream 143244 4690726 ~ 4690841 (+) True XLOC_027031
TCONS_00053290 other upstream 447077 4376498 ~ 4387008 (+) True XLOC_027026
TCONS_00053267 other upstream 2252054 2581916 ~ 2582031 (+) True XLOC_026997
TCONS_00053256 other upstream 2859191 1958240 ~ 1974894 (+) False XLOC_026987
TCONS_00053257 other upstream 2859877 1967756 ~ 1974208 (+) True XLOC_026987
TCONS_00053314 other downstream 366574 5255078 ~ 5273838 (+) True XLOC_027045
TCONS_00053330 other downstream 514611 5403115 ~ 5416987 (+) False XLOC_027051
TCONS_00053333 other downstream 577494 5465998 ~ 5478348 (+) False XLOC_027051
TCONS_00053334 other downstream 599777 5488281 ~ 5494298 (+) True XLOC_027051
TCONS_00053336 other downstream 618448 5506952 ~ 5515862 (+) False XLOC_027055

Expression Profile

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