RNA id: TU2177989


Basic Information

Item Value
RNA id TU2177989
length 1464
lncRNA type sense_over
GC content 0.40
exon number 1
gene id LOC110503787
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 13424549 ~ 13437553 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgttagctggggcaaaagtgtgacaccaatccaGCCCCTGAGGACTGGTGTTGCACGTCCTTGCTCTAGAGGCTGATCTAAGGTCAGCTTTGCATACCTCCTTCATAAATTGAGGATTTGAGGAGGGTAcattgatcctagatcagaagcATTATGTGTCCTGGCACCCCAGCCTAGCACTGTCACCCCCTCTCAGCCCAAGACAattgccttcaactgaaatgtttgATTCCTGCAGACCTGGATGCTGGATCTAGAGAACTTTGTGCCCCACCTAGTAGTGATATTTAGTAGACCCTGGCTTTTCACCCCTCCCAAAGACAATTTCACCAAAGCCTTTCATCTTGAAGGGTCATTCTCTTAGATGTTCACAAATGGTCCATTAACCTGGAATAATGCAGACGTACCTGAAGCTGTAGAGGTACCCCAAACAGCCAGGAGCTAATGCTACGACCCGCGGTGCAGAGAAGACTTGTTATGTCATAGATGAGCTCTGGGAAATAGGTAGCTAAAGTGTAGCCAGTAACAGACATGGTGCTGCAGTATGGAAACTGCTGACAAACTTATGGGGAattgtatattttgtattttgatATTTGTCATTCAAGACATTACCACTTAATCATGGAATTGGACCAACTTCTCAAGGAGTGTAGCTGTACTTTTTATACTGTGTACATATCCTCTCTGTATTTAAACTATGCTgcgattgtttttatttttgtaaagtTTGTGTTTGTTAGTTTTTATGTGTGTTATGACCAAATTGAGCCTGTCAAACTATAGCTAAGCTTCATCTCAGAGAAAAGATTGGTAATATTTACTTTTGTTTAGCCTGAATCGTGTCCATTCTGTAGCCTGGAAATCACACTCAGTGCATTTGAACATGGTGGGATTGAATGAATTCCAGAAACCACTAATTTAGGAGAGTATTTTTAGTTAATAAAAATGGGTACTAACTCATTTAAAACACCTTTCAATAGGGATGTCACTGTTGCAGATACTGGGATCCAAATACCTTAGGGAGAGTAACAACGATTAACTGTTGAAATTATGAATGGGAAAACCATGAGTTCAGTGGTAAATTGGGTATTGGATGCCATTTGCAAGTGTGTACATATGTTTACACTCAGAATGATCTCTCAAAATCCATCATTTAATACTCCAGTTCTTACATGTGCACTTCTGTAATGTTACACTTCAGGTATGGGCCTTCGTAGGGCTCTGGGTATGGTGCCTAAGATTACAAATCTGTGActgaataaaatatttttttggaaAGATGAATTTCATTTATTTCATTGCAAATAGTTTTCAGCTAGTAGAGGTAGACCTACAGCTTGATGAGGTCTTCATGACTGTTAGTAAACACATGTATAATTAAGTCATAGCCTACAGGTTCAGTGGCCTTAACAGAGTTGCTTGACTAATAATGACCATGCCAAGTtgggaaccaacagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2177985 lncRNA downstream 16181 13407607 ~ 13408368 (-) True G1904275
TU2177908 lncRNA downstream 40208 13348315 ~ 13384341 (-) True G1904208
TU2177929 lncRNA downstream 48977 13375250 ~ 13375572 (-) True G1904223
TU2177926 lncRNA downstream 52568 13371551 ~ 13371981 (-) True G1904220
TU2177919 lncRNA downstream 62617 13359869 ~ 13361932 (-) True G1904213
TU2178005 lncRNA upstream 23503 13449515 ~ 13449741 (-) True G1904291
TU2178013 lncRNA upstream 37880 13463892 ~ 13464293 (-) True G1904299
TU2178015 lncRNA upstream 39879 13465891 ~ 13466139 (-) True G1904301
TU2178022 lncRNA upstream 47084 13473096 ~ 13473323 (-) True G1904308
TU2177960 lncRNA upstream 49801 13475813 ~ 13514815 (-) True LOC110503790
XM_021582311.2 mRNA downstream 388110 12952684 ~ 13036439 (-) True LOC110503778
XM_036961915.1 mRNA downstream 525820 12881774 ~ 12898729 (-) True LOC118944087
XM_036961920.1 mRNA downstream 525824 12881774 ~ 12898725 (-) False LOC118944087
XM_036961919.1 mRNA downstream 525825 12881774 ~ 12898724 (-) False LOC118944087
XM_036961916.1 mRNA downstream 525934 12881774 ~ 12898615 (-) False LOC118944087
XM_036961068.1 mRNA upstream 49469 13475481 ~ 13546234 (-) False LOC110503790
XR_005039404.1 mRNA upstream 120325 13546337 ~ 13555170 (-) False LOC110503789
XM_036961069.1 mRNA upstream 163855 13589867 ~ 13590789 (-) False LOC110503327
XM_021582332.2 mRNA upstream 167930 13593942 ~ 13607211 (-) True kpna4
XM_036961285.1 mRNA upstream 187793 13613805 ~ 13664670 (-) False LOC110503795
TU2177124 other downstream 700552 12717450 ~ 12723997 (-) False LOC110503775
TU2177125 other downstream 705770 12717450 ~ 12718779 (-) True LOC110503775
TU2176372 other downstream 1371901 11967842 ~ 12052648 (-) True G1902875
TU2176356 other downstream 1444087 11979811 ~ 11980462 (-) True LOC110503324
TU2175607 other downstream 1963502 11453404 ~ 11461047 (-) True LOC110503748
TU2178084 other upstream 290638 13716650 ~ 13719451 (-) True rabx5
TU2178133 other upstream 331816 13757828 ~ 13758644 (-) True G1904408
TU2178616 other upstream 616958 14042970 ~ 14043449 (-) True G1904846
TU2178650 other upstream 663710 14089722 ~ 14142728 (-) True G1904877
TU2178696 other upstream 754051 14180063 ~ 14214520 (-) True G1904919

Expression Profile