RNA id: XM_021582332.2


Basic Information

Item Value
RNA id XM_021582332.2
length 3739
RNA type mRNA
GC content 0.48
exon number 17
gene id kpna4
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 13593942 ~ 13607211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCTCTACCACCGGCATTCCCAGTATGCACCGCGGACAGACCAGCAAAAAATAGTCCGGTAACTGAAAGGCCTGAGAAAAAAAGAACTTGAAAGGGGTAGCTGCTAGCTAATTAATTTCTAACGGTGTTAAAACATAGCTAAAATTGCTAATATGGCTGACAACGAGAAACTAGACAACCAGCGGCTGAAGAATTTCAAGAACAAGGGTCGCGATTTGGAGACGATGAGAAGACAGAGGACGGAGGTGGTGGTGGAACTCCGCAAGAACAAAAGGGACGAGCACCTTCTGAAGAGGAGAAACGTGCCCCACGAGGACATCTGTGAGGACTCTGATGCAGACGGAGACTTCAGATCGCAAAACACCTCTCTTGAAGCAATAGTACAAAATGCCACCAGTGATAACCAGGGAGTTCAGCTGAGTGCCGTGCAGGCTGCAAGGAAGCTGTTGTCTAGTGACCGTAACCCTCCCATAGATGACTTGATCAAGTCTGGCATTCTGCCCATCCTGGTGCACTGTCTGGACAGAGATGACAATCCATCTCTACAGTTTGAAGCTGCCTGGGCTTTGACCAACATTGCCTCAGGAACCTCAGAGCAGACCCAGGCAGTGGTCCAGTCCAATGCTGTgccactgttccttaggctgctGCACTCTCCTCACCAGAACGTGTGTGAACAGGCGGTCTGGGCCCTGGGCAACATCATAGGCGACGGTCCCCAGTGCAGGGACTATGTGATCAGTCTTGGTGTGGTGAAGCCCCTGCTGTCCTTCATCAGCCCCTCTATCCCCATCACCTTCCTCCGTAACGTCACCTGGGTCATGGTCAACCTCTGCCGCCACAAGGACCCACCACCACCCATGGAGACCATCCAGGAGATTCTTCCAGCTCTCTGTGTGCTGATCCACCACACTGATGTTAATATCCTGGTGGACACGGTGTGGGCTCTGTCCTACCTGACAGACGCTGGCAACGAGCAGATTCAGATGGTCATCGACTCGGGCATCGTTCCCAACCTGGTGCCCCTGCTTAGCCACCAGGAGGTCAAAGTCCAGaCTGCTGCTCTGCGGGCGGTGGGCAACATAGTGACTGGAACAGATGAACAGACCCAGGTGGTGCTCAACTGTGACGCCCTGGGacacttcccctctctcctcacacaccccaAGGAGAAGATCAacaagGAGGCAGTGTGGTTCCTGTCCAACATCACAGCAGGCAACCAGCAGCAGGTGCAGGCCGTCATCGACGCCAACCTGGTACCCATGATCATCCACCTTCTGGACAAGGGAGACTTTGGAACACAGAAAGAAGCAGCCTGGGCCATCAGCAACCTGACAATTAGCGGGAGGAAGGACCAGGTGGCGTACCTGATCCAGCAGCAGGTGATCCCTCCCTTCTGTAACCTGCTGACAGTGAAGGATGCTCAGGTGGTGCAGGTGGTCCTGGACGGACTCAGCAACATCCTCAAGATGGCCGACGACGAGGCCGAGACCATCGCCAACCTCATCGAGGAGTGTGGAGGTCTGGAAAAGGTGGAGCAGCTCCAGAATCATGAGAATGAAGACATCTATAAACTGGCGTATGAAATTATTGATCAGTTCTTCTCATCTGATGATATTGACGAAGACTCCAGCCTGGTTCCGGAGGCGATCCAGGGGGGAACGTACAGCTTCAATTCCTCCACCAACGTGCCAACAGAGGGGTTCCAGTTCTAGAAGGCATCTCGGGAGTCTGGAGTTTTGTTCGCGATGCAGCACTCTGTTCAACATAAAACAAAttaggagaaaaagagagcgaaagagtgtGAGAGAAATTAGATCCATTGTGCTTGGCTCGTGGGATCCATGGCTGCATCTTATCTGAGAATGTGTGGATTTCGTTTGGCATTCCGGGGGAACCAGCCCAAATGAAGTTTGAGATGGCGAGTGGGTGCGAGTGAGTGAGTGGCTACATGTTGCAAAAAACAAACATCTACATCGAATGCGTTGAGACACGCCAAGTAACTTCCATGTTATTGGAGCTGTCGACTAAAACGGAAAACTACTACAATGACAACAAAAATGCGGTGTCAGCCCGGGGAGAACCAAATACATCAAAATCAAGAAATTGAGGCAACAAATCACAAAAACACAAAAGGAAAACCAACAAAACAAGCATAAGATGAACCATATGACAATTCTGCGGTCCTCCGACCGGAGGGGGCACCACCTGTGCGCCCATCCCCAAATCGGCCACGCCATCAGACGTGTGTGAATGGACCCATTGTGTATGAATGTCTGGACTCAGTGCTGAGGAGCCAGGTTCATCTCCTCCAACCAGAGGCCCTCGATGgggcatccccccccccccccccccccccccgcggaGGTGGGCAGGGCCAGAGTCCAGCTGCGCTTGTGCGAGAGAATGGacgagtggtgtgtgtgtgcgcgtgtctggAGAGTGCAAGAAGACTGGATGTGAACgcatgcagagagaaaaaaatacataaGAGTAACAAAACCGAGAAGCGCAACCGAAGGAAAATACCAGAAGAAATTCTGCCTTAAGAGGCAGATACAAATCCCTGAAAAGAAgaactttgaaaaaaaaaaagacatcatCATAAGGGTTTTGATTGTTAAGTTAGTATTAATTAACACTGGACAATGCTTTTGGCAGGTGGAGCAGTGGGTGCATTGTATTCAGATGCATTTGGTGGCTTTTCTTTTTGCATCCAgtgtacaattttttttcttttttttttcctgCTTTTACTTTCATTGCTTATGGTGATAAGGATCATATTCCACCTTCCCACAATAACCATACCTTTGCACCAGATATGGGGTTGATGCTGTGAAATTCTGACATGACTATTGTCAACCAAATGACTTATATACTCCCCTAGCATGATTTgatgtttttttctttctcttgaAGCAAAAATCACTGCTTTGCAGTATTGTTGCCATAGCTTTGAGCTTTGACTTAACATAAGGGGGAATGAAAAATGGCAGTTATGTAACATCGATTCATAACCTTTGCATGTACTAAACTATAGCACAGTTAATTACAACTTTTTTTAGTTTCTTTAGGCTGTTTACACAGTGTCATTTAAACATTTTTGTAAACTGTGCTGTTTTAAATGTTACatgtctccccctcccctactGACCTAAATTTCTGATTTGAAGATTAAATCTGAACAGTTTTGCACATGTACTGCAGAGTGAGAGGCCTGAAGTTGTTCAGAAGGTGTGGTTAGACTCAAAATCATACCTGCTAACACCAACAATATGCATCATCCAACCACAATCTTTGTTTTATATTCAGTTGTAGCCATGATAAACTCATGTTGAGCCATTTTAGTGAGTGAGAAACTTTTAAGGGGGGCAATAATTGTTTTGCCTCTGATGTTGAGGCACCCCTGAGTTGGGGAAAGGTAAGTATCGGGGATTGGACCCCCAAGCCTCGACAAGGTGTCTCAATGATACATGTTGAGCCTTATTCCTTAATCTAAAACTCATGAACAAGTTTGCAGTACCTCCCAACCCCTTGCTCCTTCCCCCTCTTTACCATTAGGTGCACCATCTTCCCCTTCTGTTgaacatagttttttttttttagcagcaGCAGCATTCCTTGTTAGCAAAGATGTGGTTtcaaaaaaaaatggaatggaaGAAGGTGGTTATCCTGTTGAGTTAGATCTACAGGCTAGGTTGTCTTCAAGAAAATAAATAGTGAAACCTA

Function

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K23583 KPNA3_4; importin subunit alpha-4/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2177962 lncRNA downstream 379 13590271 ~ 13593563 (-) True LOC110503327
TU2177969 lncRNA downstream 35544 13555267 ~ 13558398 (-) True G1904260
TU2177968 lncRNA downstream 46897 13546481 ~ 13547045 (-) True LOC110503789
TU2178045 lncRNA downstream 76497 13517070 ~ 13517445 (-) True G1904331
TU2177960 lncRNA downstream 79127 13475813 ~ 13514815 (-) True LOC110503790
TU2178099 lncRNA upstream 74984 13682195 ~ 13682431 (-) True G1904377
TU2178101 lncRNA upstream 77479 13684690 ~ 13684979 (-) True G1904379
TU2178105 lncRNA upstream 84744 13691955 ~ 13692200 (-) True G1904383
TU2178106 lncRNA upstream 89771 13696982 ~ 13697375 (-) True G1904384
TU2178108 lncRNA upstream 91870 13699081 ~ 13700576 (-) True G1904386
XM_036961069.1 mRNA downstream 3153 13589867 ~ 13590789 (-) False LOC110503327
XR_005039404.1 mRNA downstream 38772 13546337 ~ 13555170 (-) False LOC110503789
XM_036961068.1 mRNA downstream 47708 13475481 ~ 13546234 (-) False LOC110503790
XM_021582321.2 mRNA downstream 156389 13424728 ~ 13437553 (-) False LOC110503787
XM_021582322.2 mRNA downstream 156389 13424728 ~ 13437553 (-) False LOC110503787
XM_036961285.1 mRNA upstream 6594 13613805 ~ 13664670 (-) False LOC110503795
XM_036961283.1 mRNA upstream 6594 13613805 ~ 13665732 (-) False LOC110503795
XM_036961284.1 mRNA upstream 6594 13613805 ~ 13665755 (-) False LOC110503795
XM_021582333.2 mRNA upstream 6594 13613805 ~ 13666475 (-) True LOC110503795
XM_021582338.2 mRNA upstream 95151 13702362 ~ 13707140 (-) False LOC110503800
TU2177124 other downstream 869945 12717450 ~ 12723997 (-) False LOC110503775
TU2177125 other downstream 875163 12717450 ~ 12718779 (-) True LOC110503775
TU2176372 other downstream 1541294 11967842 ~ 12052648 (-) True G1902875
TU2176356 other downstream 1613480 11979811 ~ 11980462 (-) True LOC110503324
TU2175607 other downstream 2132895 11453404 ~ 11461047 (-) True LOC110503748
TU2178084 other upstream 109439 13716650 ~ 13719451 (-) True rabx5
TU2178133 other upstream 150617 13757828 ~ 13758644 (-) True G1904408
TU2178616 other upstream 435759 14042970 ~ 14043449 (-) True G1904846
TU2178650 other upstream 482511 14089722 ~ 14142728 (-) True G1904877
TU2178696 other upstream 572852 14180063 ~ 14214520 (-) True G1904919

Expression Profile