RNA id: XM_021582337.2


Basic Information

Item Value
RNA id XM_021582337.2
length 1585
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110503800
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 13702362 ~ 13707142 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTGAAAACTAGTCTCATTTCCCCTGACAATATATAGAGATTGTAGTGTAATCATCCCCATCAGAAGCACAAGCATAACATTCAACATGAAGCTGTTACTGAGCCTCCTTGTTGTTTCGACACTACCTACATGGGCTGTACCACAAGTTCTCCCCATGAGGGCTCCGCTGACAGCCGTGGCTGAGCTAGTTAATGGGGGACCCCGGATCTTCTCAGGGGAGAGAGTACGTCTGAAGTGCAGTGTTCCTGGGAAAGTGTCGGCCGAGTGGAGGTACCAGTGGTTCAGGGGGGGAGAGCAGCTCCAGGAGTCTGAGTACTTTGTCCTATGGAAGGCCAGGCCACAGCAGAGTGGGAAGTATTACTGCCAGGGCCTGAGAACCACATGGATAAGCACACAACACACCCTCCACAGCCTGCCTATAGAAATAGAGGTGGACGGTGGGTGGGCCATCTTGCAGGCCCCGCCCCTGCCCATGCTGGTTGGAGAGACAATGACCCTGATGTGTCGTGTCCGTGGCAACCCTAGACTGACTGAGGTCATACTCTACAAGGACGGGGTGGAGCTTCAGAGACAGTCTGGACCAGAGCTGTGTGTCACTAACCTTACCCTGCAACACCACGGATCCTATTGGTGCAGAGCATCCTGGGATGGACTGAGGCAAACCAACTCTGTGATCTCAGTGGCTGCTTCGGTGTCCATCATAGAGGTTCTGACAGAACCCATGTTGGAGATTGTGCCCAATGACCCTCTGATCCATAAAGACCGTATGCTCCTGGTGTGTCATGTTCAACTGAACGCCCGTGAGCCCGTTTCACACatccactactacttctaccaggACGGGCTGAGTCTGGGGCTTGCCTCTTCCCAGGACAGAGTCACAGTACTGAGGGACTCAGGCCGGTACTGGTGCAAAGCCAGCATTCCTACTCTGGGGCTGAAGAGGCTCAGCGAGCCCGTACCTTATGGGCGAGTGACAGatatcaggacagcgattactcatcCCGTACTGGAGGAACACTTTTTCTACAACGAGTCAGACAGGAAGGTTTTACTTCATGCGCCTGACAAGGACCTCATgcccgtcattcgcaggagaaagagacggagGGATACATCAGGGACCAGCTGTCTCACTCCAACCCAGAGCTCCATCTCATCCAGATCCTATGAAAGGACCTCCCCAGACCACCACCTCTATCCAGCCTTCTGAGCCCCTTACCTTCCCCGATGTATCCGGTGATTCTCCAAACACACTGGCCCCTGGTGTTGGTTCAGATGATGGAACAGTGGTGTGGAAGGACTTCTAAATTCCTTAAGAATTGTTAATTAATATGTTATTTGTCTTTTAGGTTGTGAATGAAACAATGAATTGTATTTGAACTGTCGATTATAAGTTCAATGCAAATAATTTCAGTCAAAGTCAAACATTTACATATTGATTTTATTTCAAAAGTGTACAAAAGCTCATTTTCAAAAAGCTCCTAATACAGCGATACGATGTACTGATTCCTTAACCTAACCTGGGAAACATTGTGTGATTAGTATTCCTCGAGTAATAAACATTAACTATTCCAGTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2178108 lncRNA downstream 1786 13699081 ~ 13700576 (-) True G1904386
TU2178106 lncRNA downstream 4987 13696982 ~ 13697375 (-) True G1904384
TU2178105 lncRNA downstream 10162 13691955 ~ 13692200 (-) True G1904383
TU2178101 lncRNA downstream 17383 13684690 ~ 13684979 (-) True G1904379
TU2178099 lncRNA downstream 19931 13682195 ~ 13682431 (-) True G1904377
TU2178113 lncRNA upstream 19266 13726407 ~ 13726650 (-) True G1904389
TU2178115 lncRNA upstream 20644 13727785 ~ 13728062 (-) True G1904391
TU2178117 lncRNA upstream 22887 13730028 ~ 13730265 (-) True G1904393
TU2178120 lncRNA upstream 27618 13734759 ~ 13740554 (-) True G1904396
TU2178123 lncRNA upstream 34057 13741198 ~ 13741519 (-) True G1904398
XM_021582333.2 mRNA downstream 35887 13613805 ~ 13666475 (-) True LOC110503795
XM_036961284.1 mRNA downstream 36607 13613805 ~ 13665755 (-) False LOC110503795
XM_036961283.1 mRNA downstream 36630 13613805 ~ 13665732 (-) False LOC110503795
XM_036961285.1 mRNA downstream 37692 13613805 ~ 13664670 (-) False LOC110503795
XM_021582332.2 mRNA downstream 95151 13593942 ~ 13607211 (-) True kpna4
NM_001160674.1 mRNA upstream 10826 13717967 ~ 13719447 (-) False rabx5
XM_021581696.2 mRNA upstream 104511 13811652 ~ 13812593 (-) True LOC110503330
XM_021581699.2 mRNA upstream 180378 13887519 ~ 13888439 (-) True LOC110503333
XM_021581700.2 mRNA upstream 188144 13895285 ~ 13896205 (-) True LOC110503334
XM_036961074.1 mRNA upstream 195898 13903039 ~ 13903959 (-) True LOC118943997
TU2177124 other downstream 978365 12717450 ~ 12723997 (-) False LOC110503775
TU2177125 other downstream 983583 12717450 ~ 12718779 (-) True LOC110503775
TU2176372 other downstream 1649714 11967842 ~ 12052648 (-) True G1902875
TU2176356 other downstream 1721900 11979811 ~ 11980462 (-) True LOC110503324
TU2175607 other downstream 2241315 11453404 ~ 11461047 (-) True LOC110503748
TU2178084 other upstream 9509 13716650 ~ 13719451 (-) True rabx5
TU2178133 other upstream 50687 13757828 ~ 13758644 (-) True G1904408
TU2178616 other upstream 335829 14042970 ~ 14043449 (-) True G1904846
TU2178650 other upstream 382581 14089722 ~ 14142728 (-) True G1904877
TU2178696 other upstream 472922 14180063 ~ 14214520 (-) True G1904919

Expression Profile